Alignments for a candidate for hutU in Cereibacter sphaeroides ATCC 17029

Align Urocanate hydratase (EC 4.2.1.49) (characterized)
to candidate WP_011841112.1 RSPH17029_RS07995 urocanate hydratase

Query= reanno::Phaeo:GFF3577
         (559 letters)



>NCBI__GCF_000015985.1:WP_011841112.1
          Length = 560

 Score =  935 bits (2416), Expect = 0.0
 Identities = 442/554 (79%), Positives = 491/554 (88%)

Query: 5   RKNTRDIFPPTGPEITAKSWMTEAPMRMMMNNLHPDVAENPHELVVYGGIGRAARTWQDF 64
           R N RDIFPPTG  ++A++W +EA +RM+MNNLHPDVAE PHELVVYGGIGRAAR+W+DF
Sbjct: 4   RHNLRDIFPPTGSTLSARNWQSEAALRMLMNNLHPDVAETPHELVVYGGIGRAARSWEDF 63

Query: 65  DLIVETLKNLEEDQTLMVQSGKPVGVFQTHKDAPRVLIANSNLVPHWANWDHFNELDKKG 124
           D IV  L+ LE D+TL+VQSG+PVGVF+TH+DAPRVLIANSNLVPHWA W+HF+ELD+KG
Sbjct: 64  DRIVAALRALEADETLLVQSGRPVGVFRTHEDAPRVLIANSNLVPHWATWEHFHELDRKG 123

Query: 125 LMMYGQMTAGSWIYIGTQGIVQGTYETFAEAGRQHFGGSLKGKWILTGGLGGMGGAQPLA 184
           LMMYGQMTAGSWIYIGTQGIVQGTYETFAE GRQ +GG L G+W+LT GLGGMGGAQPLA
Sbjct: 124 LMMYGQMTAGSWIYIGTQGIVQGTYETFAEVGRQQYGGDLTGRWVLTAGLGGMGGAQPLA 183

Query: 185 AVFAGASCLAVECNPDSIDFRLRTKYLDEKAETLDEALQMIERWTAAGEAKSVGLLGNAA 244
           AV AGASCLAVEC+   ID RLRT+YLDEKA+TLDEAL +I RWTAAGEA+SVGLLGNAA
Sbjct: 184 AVMAGASCLAVECDESRIDARLRTRYLDEKAQTLDEALALIARWTAAGEARSVGLLGNAA 243

Query: 245 EIFPELVKRAETGGIRPDIVTDQTSAHDPVNGYLPLGWTMGEWKERRESDKKAVEKAARA 304
           E+ PE++ R   GG RPDIVTDQTSAHDP++GYLP GW++G+W+ R ESD  AV KAARA
Sbjct: 244 EVVPEILARMRAGGPRPDIVTDQTSAHDPLHGYLPAGWSLGDWRARAESDPAAVTKAARA 303

Query: 305 SMKVQVKAMCDFHAMGVPTVDYGNNIRQMALEEGLENAFDFPGFVPAYIRPLFCRGIGPF 364
           +M+  V+AM  FH  GVPT+DYGNNIRQMALEEG   AF FPGFVPA IRPLFCRGIGPF
Sbjct: 304 AMRTHVEAMVGFHDAGVPTLDYGNNIRQMALEEGFARAFAFPGFVPACIRPLFCRGIGPF 363

Query: 365 RWAALSGDPEDIRKTDAKMKELFPENAGLHRWLDMAQERIAFQGLPARICWIGLGDRHKA 424
           RW ALSGDPEDIR+TDAKMKELFP+NA LHRWLDMA ERIAFQGLPARICWIGLG+RH A
Sbjct: 364 RWVALSGDPEDIRRTDAKMKELFPDNAHLHRWLDMAAERIAFQGLPARICWIGLGERHLA 423

Query: 425 GLAFNEMVRTGELSAPVVIGRDHLDSGSVASPNRETESMLDGSDAVSDWPLLNALLNTAS 484
           GLAFNEMVR GEL+APVVIGRDHLDSGSVASPNRETE+M DGSDAVSDWPLLNALLNTAS
Sbjct: 424 GLAFNEMVRRGELAAPVVIGRDHLDSGSVASPNRETEAMKDGSDAVSDWPLLNALLNTAS 483

Query: 485 GATWVSLHHGGGVGMGFSQHSGVVICCDGSEDADRRVGRVLWNDPATGVMRHADAGYDIA 544
           GATWVSLHHGGGVGMGFSQH+G+VICCDGS  ADRR+ RVLWNDPATGVMRHADAGY+ A
Sbjct: 484 GATWVSLHHGGGVGMGFSQHAGMVICCDGSAAADRRLARVLWNDPATGVMRHADAGYEKA 543

Query: 545 KDCAQEHGLNLPGI 558
             CA+ HGL LP I
Sbjct: 544 LACARTHGLTLPSI 557


Lambda     K      H
   0.319    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1166
Number of extensions: 36
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 560
Length adjustment: 36
Effective length of query: 523
Effective length of database: 524
Effective search space:   274052
Effective search space used:   274052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_011841112.1 RSPH17029_RS07995 (urocanate hydratase)
to HMM TIGR01228 (hutU: urocanate hydratase (EC 4.2.1.49))

Software error:

../bin/blast/fastacmd -i /tmp/list.24624.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.24624.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.