Align Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (characterized)
to candidate WP_011841128.1 RSPH17029_RS08140 CoA-acylating methylmalonate-semialdehyde dehydrogenase
Query= reanno::Caulo:CCNA_01360
(500 letters)
>NCBI__GCF_000015985.1:WP_011841128.1
Length = 499
Score = 655 bits (1690), Expect = 0.0
Identities = 323/486 (66%), Positives = 383/486 (78%), Gaps = 1/486 (0%)
Query: 2 MRDIPHFIGGQKVDGASGRFGEVFDPNTGKVQARVALASAGELNTAIANAKVAQAAWAAT 61
M ++ H+I G++V G SGRF +VF+P TG+VQARV LAS EL+ A+A+A AQ WAAT
Sbjct: 1 MEELSHWIDGKRVKGTSGRFADVFNPATGEVQARVPLASKDELDAAVASAAAAQPKWAAT 60
Query: 62 NPQRRARVMFEFKRLLEVHMDELAALLSSEHGKVIADSKGDIQRGLEVIEFACGVPHLLK 121
NPQRRARVM E RLL MD+LA LS EHGK I D+KGD+QRGLEVIEF G PHLLK
Sbjct: 61 NPQRRARVMMEVVRLLNRDMDKLAEALSREHGKTIPDAKGDVQRGLEVIEFCIGAPHLLK 120
Query: 122 GEYTQGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWMFGPAIATGNAFILKPSERDPS 181
GE+T AGPGID+YSMRQPLGV AGITPFNFPAMIP+W GPA+A GNAFILKPSERDPS
Sbjct: 121 GEFTDSAGPGIDMYSMRQPLGVAAGITPFNFPAMIPLWKMGPALAAGNAFILKPSERDPS 180
Query: 182 VPVRLAELMIEAGLPPGVLNVVHGDKDCVEAILDHPDIKAVSFVGSSDIAQSVFQRAGAA 241
VP+ LAE+ EAGLP GVL VV+GDK+ V+AILD+P I AV FVGS+ IA+ ++ R A
Sbjct: 181 VPLMLAEIFQEAGLPDGVLQVVNGDKESVDAILDNPTIAAVGFVGSTPIAEYIYSRGCAN 240
Query: 242 GKRVQAMGGAKNHGLVMPDADLDQAVADIIGAAYGSAGERCMALPVVVPVGEKTATALRE 301
GKRVQ GGAKNH ++MPDADLDQA ++GA YG+AGERCMA+ V VPVG++TA AL E
Sbjct: 241 GKRVQCFGGAKNHMIIMPDADLDQAADALVGAGYGAAGERCMAISVAVPVGDETADALIE 300
Query: 302 KLVAAIGGLRVGVST-DPDAHYGPVVSAAHKARIESYIQMGVDEGAELVVDGRGFSLQGH 360
+L+ I L+VG T D YGPVV+AA + I +Q GVD+GA+LVVDGR FSLQG+
Sbjct: 301 RLIPRIEKLKVGPYTAGNDVDYGPVVTAAARENILRLVQSGVDQGAKLVVDGRNFSLQGY 360
Query: 361 EEGFFVGPTLFDHVKPTSRSYHDEIFGPVLQMVRAESLEEGIALASRHQYGNGVAIFTRN 420
E+GFFVGP LFDHV+P Y EIFGPVL VRA S EE ++LA H+YGNG AI+TR+
Sbjct: 361 EKGFFVGPHLFDHVRPDMDIYRKEIFGPVLSTVRAASYEEALSLAMDHEYGNGTAIYTRD 420
Query: 421 GDAAREFADQVEVGMVGINVPIPVPVAYHSFGGWKRSGFGDLNQYGMDGVRFYTRTKTVT 480
GDAAR+FA +V VGM+GINVPIPVP+AYH+FGGWK+S FGDLNQ+G D RFYTRTKT+T
Sbjct: 421 GDAARDFAARVNVGMIGINVPIPVPLAYHTFGGWKKSAFGDLNQHGPDSFRFYTRTKTIT 480
Query: 481 QRWPKG 486
RWP G
Sbjct: 481 SRWPSG 486
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 873
Number of extensions: 33
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 499
Length adjustment: 34
Effective length of query: 466
Effective length of database: 465
Effective search space: 216690
Effective search space used: 216690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Align candidate WP_011841128.1 RSPH17029_RS08140 (CoA-acylating methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.6690.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.6690.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.