Alignments for a candidate for lpd in Cereibacter sphaeroides ATCC 17029

Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate WP_011841131.1 RSPH17029_RS08165 dihydrolipoyl dehydrogenase

Query= BRENDA::P50970
         (466 letters)



>NCBI__GCF_000015985.1:WP_011841131.1
          Length = 464

 Score =  546 bits (1408), Expect = e-160
 Identities = 275/465 (59%), Positives = 349/465 (75%), Gaps = 3/465 (0%)

Query: 2   ADHFDLIVLGGGPGGYVAAIRAAQLNLKVALVERVHLGGICLNWGCIPTKSLLRSAEVYH 61
           A  FD+IV+G GPGGYV AIR AQL L VA+VER +LGGICLNWGCIPTK++LRSAEVYH
Sbjct: 3   AKSFDMIVIGAGPGGYVCAIRGAQLGLNVAIVERENLGGICLNWGCIPTKAMLRSAEVYH 62

Query: 62  EMQNAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQ 121
            M  A+ +GL +    +DL  ++ RSR VA +L+SGV  L++KN++ V+ G   L G  +
Sbjct: 63  LMHRAKEFGLKAEGIGYDLGAVVKRSRGVAKQLSSGVAHLMKKNRITVVMGDATLAGKGR 122

Query: 122 MLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGS 181
           + V+T +G E+ LEAK I++ATGARAR+LP + +DG  +WTY HAL+P  MPKKLLVIGS
Sbjct: 123 VSVKTDKGTEE-LEAKSIVLATGARARELPGLEADGDLVWTYRHALEPKRMPKKLLVIGS 181

Query: 182 GAIGIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLT 241
           GAIGIEFASF+   GA+ ++VE   +ILP+EDAEVSA+  K F K+G++IL ++ ++ L 
Sbjct: 182 GAIGIEFASFFNTLGADTTVVEVMDRILPVEDAEVSAFAKKQFVKQGMKILEKATVKKLD 241

Query: 242 PDDEGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDRGFIAVDGFGRT 301
                VTA I    GK     F   I A+G+V NVE +GL+  G+ +DR  +  D + RT
Sbjct: 242 RAGGKVTAHIE-TGGKTETMEFDTVISAVGIVGNVEGLGLEAAGVTVDRSHVVTDEYCRT 300

Query: 302 NVDHVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVG 361
            V+ ++AIGD+AGAP LAHKASH+GV+ AE IAG  H HP+   +I GCTY +PQVASVG
Sbjct: 301 GVEGLYAIGDIAGAPWLAHKASHEGVMVAELIAG-GHPHPIKPGSIAGCTYCQPQVASVG 359

Query: 362 LTEEKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEM 421
           LTE KA+++GY +++G FPFI NGKAIA G  +GFVKTVFDA +G LLGAHMVGAEVTE+
Sbjct: 360 LTEAKAKEKGYEIRVGRFPFIGNGKAIALGEAEGFVKTVFDAKTGELLGAHMVGAEVTEL 419

Query: 422 IQGYTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALHF 466
           IQGY V R LETTEAE+MET+FPHPTLSE MHESVL AYGRA+HF
Sbjct: 420 IQGYVVGRALETTEAELMETVFPHPTLSEMMHESVLDAYGRAIHF 464


Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 725
Number of extensions: 27
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 464
Length adjustment: 33
Effective length of query: 433
Effective length of database: 431
Effective search space:   186623
Effective search space used:   186623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841131.1 RSPH17029_RS08165 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.17319.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.17319.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.