Alignments for a candidate for mmsB in Cereibacter sphaeroides ATCC 17029

Align 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (characterized)
to candidate WP_011841234.1 RSPH17029_RS09040 3-hydroxyisobutyrate dehydrogenase

Query= reanno::pseudo3_N2E3:AO353_05985
         (294 letters)



>NCBI__GCF_000015985.1:WP_011841234.1
          Length = 290

 Score =  259 bits (662), Expect = 5e-74
 Identities = 142/289 (49%), Positives = 182/289 (62%), Gaps = 9/289 (3%)

Query: 1   MKIAFIGLGNMGAPMARNLIKAGHSLNLVDLNKAVLAELAQLGGTISATAREAAQGAELV 60
           MKIAFIGLGNMG PMARNL  AGH +   DL     A  A  G   +A+A EAA GAE+V
Sbjct: 1   MKIAFIGLGNMGGPMARNLATAGHEVTGFDL-----AAPAPEGVRAAASAVEAATGAEVV 55

Query: 61  ITMLPAAVHVRSVWLGEDGVLAGIAKGVPAVDCSTIDPQTARDVAAAAAKQGVAMADAPV 120
           +TMLP    +R V      ++  +  G    DCST+D ++AR VAA A   G+   DAPV
Sbjct: 56  VTMLPNGAILRQV---AQEIVPAMTAGAVLCDCSTVDVESARAVAAEAEAAGLGALDAPV 112

Query: 121 SGGTGGAAAGTLTFMVGATPELFATLQPVLAQMGRNIVHCGEVGTGQIAKICNNLLLAIS 180
           SGG GGAAAGTLTFMVG +   FAT+QP+   MG+  VHCG  G GQ AKICNN++L ++
Sbjct: 113 SGGVGGAAAGTLTFMVGGSDAAFATVQPLFEIMGQKAVHCGGPGAGQAAKICNNMILGVT 172

Query: 181 MVGVSEAMALGDALGIDTQVLAGIINSSTGRCWSSEMYNPWPGIVETAPASRGYTGGFGA 240
           M+   EA AL D LG+D Q +  ++++S+G  WS   Y P PG+  T+PA  GY  GF A
Sbjct: 173 MIATCEAFALADKLGLDRQKMFDVVSTSSGYSWSMNAYCPAPGVGPTSPADNGYKPGFAA 232

Query: 241 ELMLKDLGLATEAARQAHQPVMLGAVAQQLYQA-MSQRGEGGKDFSAII 288
           ELMLKDL L+ +AA  A     +G +A  LY+  +   G  G+DFSA++
Sbjct: 233 ELMLKDLRLSQQAAEDADADTPMGQLAATLYETFVEAEGGRGRDFSAML 281


Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 244
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 290
Length adjustment: 26
Effective length of query: 268
Effective length of database: 264
Effective search space:    70752
Effective search space used:    70752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011841234.1 RSPH17029_RS09040 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.18943.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.18943.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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