Alignments for a candidate for sdaB in Cereibacter sphaeroides ATCC 17029

Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate WP_011841375.1 RSPH17029_RS10115 L-serine ammonia-lyase

Query= reanno::acidovorax_3H11:Ac3H11_929
         (466 letters)



>NCBI__GCF_000015985.1:WP_011841375.1
          Length = 459

 Score =  455 bits (1170), Expect = e-132
 Identities = 241/467 (51%), Positives = 316/467 (67%), Gaps = 9/467 (1%)

Query: 1   MSVSVFDLFKIGIGPSSSHTVGPMIAARQFACHVQGTLGLDAVHHVTVELFGSLSATGVG 60
           M +SVFD+FK+G+GPSSSHT+GPM+AA +F   ++ +      H +   L GSL+ TGVG
Sbjct: 1   MFLSVFDIFKVGVGPSSSHTMGPMVAAGRFLDRLRASPF--HAHGLRASLHGSLAFTGVG 58

Query: 61  HGTDKAVLLGLAGHEPDHIDPDQILPAIADIRTRQTLALLGEHPVPFVEKEHLLFRR-KS 119
           H TD+A +LGLAG EP   D ++    +A IR    +   G  P+ F  ++ L+F    +
Sbjct: 59  HATDRATILGLAGFEPGSYDAERAEDVLAAIRATGRIEAPGLGPLQFDPEKDLVFDYGHA 118

Query: 120 LPLHPNGMAFHAFDAQGNEIATREYYSVGGGFVIDAAGERVLNSAATAGPDAVGHAQGLP 179
           LP H NGM   A DAQG+ + +  YYSVGGGFV+  A        A +  D       +P
Sbjct: 119 LPGHANGMRIQATDAQGDVLLSEVYYSVGGGFVLTEA------ELAESKSDRPAAGPAVP 172

Query: 180 HPFRTGAELLAQCQATGLTPAQLMAANEQHWRSASEVRRQLMAIWKTMAGAVQRGCASTG 239
            PF +  ++L   +A+GL+ A +  ANE   R+A E+ R L  IW+ M   ++RG  + G
Sbjct: 173 FPFESAHQMLGMAEASGLSIAAMKRANELAVRNAPELDRGLKRIWQVMNDCIERGMETGG 232

Query: 240 TLPGPMHVRRRAAELHHKLSSAPEAALRDPLSMLDWVNLYAMAVNEENAAGGRVVTAPTN 299
           TLPG +HVRRRA  +   L +     +  P ++ DW++LYAMAVNEENAAGG+VVTAPTN
Sbjct: 233 TLPGGLHVRRRAKGIREALLAERGLNMTAPHTINDWMSLYAMAVNEENAAGGQVVTAPTN 292

Query: 300 GAAGVIPAVLHYYVNFLPGANEDGIATFLLTAGAIGIIYKENASLSGAEVGCQGEVGVAC 359
           GAAGV+PAV+ Y+++ +PGA+   +  FLLTA AIG + K NAS+SGAE GCQ EVG A 
Sbjct: 293 GAAGVVPAVIRYWLDHVPGASPAKLGDFLLTAAAIGGLVKHNASISGAECGCQAEVGSAA 352

Query: 360 SMAAGALAAVMGGSPEQIENAAEIGMEHNLGMTCDPVGGLVQIPCIERNAMGAIKAINAA 419
           +M A  LAAV+GG+P Q+ENAAEI +EH+LGMTCDPV GLVQ+PCIERN +GAIKA++AA
Sbjct: 353 AMGAAGLAAVLGGTPAQVENAAEIALEHHLGMTCDPVRGLVQVPCIERNGLGAIKAVSAA 412

Query: 420 RMALRGDGQHVVSLDKVIKTMMQTGADMKVKYKETSRGGLAVNVVEC 466
            +ALRGDG+H+VSLD  I+TM QTG DM  KYKETS GGLAVNV  C
Sbjct: 413 SLALRGDGEHLVSLDVCIETMRQTGRDMNEKYKETSLGGLAVNVPNC 459


Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 678
Number of extensions: 21
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 459
Length adjustment: 33
Effective length of query: 433
Effective length of database: 426
Effective search space:   184458
Effective search space used:   184458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841375.1 RSPH17029_RS10115 (L-serine ammonia-lyase)
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.16390.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.16390.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.