Alignments for a candidate for hisD in Cereibacter sphaeroides ATCC 17029

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_011841567.1 RSPH17029_RS11520 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000015985.1:WP_011841567.1
          Length = 434

 Score =  503 bits (1296), Expect = e-147
 Identities = 258/420 (61%), Positives = 320/420 (76%)

Query: 10  PDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAVT 69
           P FE  F A L  KRE S DVD  V  I+  VR  GD+A+++ + RFDR++L    +A +
Sbjct: 10  PGFEADFTALLGMKREDSPDVDAVVAGIIADVRARGDAAVIELTARFDRLELTPERLAFS 69

Query: 70  EAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAVGL 129
           EAEI+A      A    AL+LA +RI  +HARQ+P++ R+TDA G ELG RW  I + GL
Sbjct: 70  EAEIEAEIATVSAEDRAALELAAERIRAYHARQMPENARWTDAAGAELGWRWGPIASAGL 129

Query: 130 YVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAGVSEIYRVGG 189
           YVPGG ASYPSSVLMNA+PA+VAGV+R+V+  P P G +NPLVL+AARLAGV  +YR+GG
Sbjct: 130 YVPGGLASYPSSVLMNAIPARVAGVERLVVACPTPGGVVNPLVLLAARLAGVDAVYRIGG 189

Query: 190 AQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDNNP 249
           AQA+AALAYGTETIRPV KI GPGNAYVAAAKR VFG VGIDMIAGPSE+L++A+   +P
Sbjct: 190 AQAVAALAYGTETIRPVDKITGPGNAYVAAAKRRVFGRVGIDMIAGPSEILVIAEGAVDP 249

Query: 250 DWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGAVI 309
           DWIA DLL+QAEHD +AQSIL+T DEA   AV +AVE +L TL R   A ASWRD+GAVI
Sbjct: 250 DWIALDLLSQAEHDESAQSILVTPDEALGRAVVQAVEARLETLERRAIAGASWRDYGAVI 309

Query: 310 LVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGCNHV 369
           + +D E+A  L++R+A EHLE+ VAD EA   RIR+AG+IF+G +TPE IGDYVGG NHV
Sbjct: 310 VTRDLEEAAALSDRVAPEHLELYVADPEALAARIRHAGAIFLGAWTPEAIGDYVGGPNHV 369

Query: 370 LPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIRLN 429
           LPTARSARFSSGLSV+D++KRT+L ++    LRA+GPAA  +A +E L+AH  SV  RL+
Sbjct: 370 LPTARSARFSSGLSVMDFLKRTTLARMTPAALRAVGPAAERLAISESLEAHGLSVRARLD 429


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 570
Number of extensions: 30
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 434
Length adjustment: 32
Effective length of query: 398
Effective length of database: 402
Effective search space:   159996
Effective search space used:   159996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841567.1 RSPH17029_RS11520 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.13392.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.13392.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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