Alignments for a candidate for lysA in Cereibacter sphaeroides ATCC 17029

Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_011841628.1 RSPH17029_RS12035 diaminopimelate decarboxylase

Query= reanno::Korea:Ga0059261_2051
         (419 letters)



>NCBI__GCF_000015985.1:WP_011841628.1
          Length = 421

 Score =  417 bits (1073), Expect = e-121
 Identities = 219/422 (51%), Positives = 280/422 (66%), Gaps = 5/422 (1%)

Query: 1   MDHFNRKNGVLHAENVSIPAIAAEVGTPVYVYSTATLERHASALKNALAGLPSVHLAFAI 60
           MDHF  +NG LHAE V +  IAA VGTP Y YS ATLERH      AL  LP + + FAI
Sbjct: 1   MDHFLYRNGSLHAEEVPLSDIAATVGTPFYCYSAATLERHYRLFTEALTPLPHL-VCFAI 59

Query: 61  KANPNLAVLGVLARQGYGADVVSGGELKRALAAGMPAEDVVFSGVGKTRAELQLGLDEGI 120
           K+  NLAVL +L   G G DVVS GE  RA AAG+P + +VFSGVGKTR E+++ L+ GI
Sbjct: 60  KSLSNLAVLKLLGDLGAGMDVVSAGEYLRARAAGVPGDRIVFSGVGKTREEMRIALEGGI 119

Query: 121 GQFNLELEEEGEVLADLAHAQGKTAPAVLRVNPDVDAGTHAKISTGKAENKFGVAIDRAL 180
            QFN+E E E   L+++A + G  AP  +RVNPDVDA TH KI+TGK ENKFG+ I+RA 
Sbjct: 120 RQFNVESEPEMRALSEVASSMGLRAPIAVRVNPDVDARTHEKIATGKKENKFGIPIERAS 179

Query: 181 EIFDRLAKRPGLNLRGVAIHIGSQLTELAPLEAAYKRVGELVAQLRAAGHTITHVDLGGG 240
           E++   A  PGL + G+ +HIGSQLTEL P E AY +V EL  +LRA GH I  +DLGGG
Sbjct: 180 EVYAEAAALPGLEVMGIDVHIGSQLTELEPFEQAYLKVAELTGRLRAEGHEIRRLDLGGG 239

Query: 241 LGVPY-HAGQTVSTAEEFGAMVARVTQGWNVTLMFEPGRFICGNAGVLVTEVIWVKPAAG 299
           LG+PY  + +      ++GA++ R        +  EPGR I GN+GVLV+ VI+VK   G
Sbjct: 240 LGIPYTRSNEAPPLPTDYGALIKRTVGHLGCEIEIEPGRLISGNSGVLVSRVIYVKNGEG 299

Query: 300 NPYVIVDAAMNDLARPALYDAYHE---FEAVEPTGEKFVANIAGPVCETGDTFAMGREID 356
             ++I+DAAMNDL RP++Y A+H+        P  +    ++ GPVCETGDTFA  R + 
Sbjct: 300 RDFLILDAAMNDLVRPSMYGAHHDIVPLAEAAPGTDSQPYDVVGPVCETGDTFAKARALP 359

Query: 357 VVKSGDLAVFRTAGAYGATMASTYNSRALVPEVLVSGDRFAVVADRIQPETIMGAERVPE 416
            +  GDL  FR+AGAYGA MAS YNSR LVPEVLV GD FAV+  R   + ++G + +PE
Sbjct: 360 PMAEGDLVAFRSAGAYGAVMASEYNSRPLVPEVLVRGDHFAVIRARPTFDEMLGRDSIPE 419

Query: 417 WV 418
           W+
Sbjct: 420 WL 421


Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 530
Number of extensions: 28
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 421
Length adjustment: 32
Effective length of query: 387
Effective length of database: 389
Effective search space:   150543
Effective search space used:   150543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011841628.1 RSPH17029_RS12035 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.13999.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.13999.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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