Align diaminopimelate decarboxylase (EC 4.1.1.20) (characterized)
to candidate WP_011841628.1 RSPH17029_RS12035 diaminopimelate decarboxylase
Query= reanno::Korea:Ga0059261_2051 (419 letters) >NCBI__GCF_000015985.1:WP_011841628.1 Length = 421 Score = 417 bits (1073), Expect = e-121 Identities = 219/422 (51%), Positives = 280/422 (66%), Gaps = 5/422 (1%) Query: 1 MDHFNRKNGVLHAENVSIPAIAAEVGTPVYVYSTATLERHASALKNALAGLPSVHLAFAI 60 MDHF +NG LHAE V + IAA VGTP Y YS ATLERH AL LP + + FAI Sbjct: 1 MDHFLYRNGSLHAEEVPLSDIAATVGTPFYCYSAATLERHYRLFTEALTPLPHL-VCFAI 59 Query: 61 KANPNLAVLGVLARQGYGADVVSGGELKRALAAGMPAEDVVFSGVGKTRAELQLGLDEGI 120 K+ NLAVL +L G G DVVS GE RA AAG+P + +VFSGVGKTR E+++ L+ GI Sbjct: 60 KSLSNLAVLKLLGDLGAGMDVVSAGEYLRARAAGVPGDRIVFSGVGKTREEMRIALEGGI 119 Query: 121 GQFNLELEEEGEVLADLAHAQGKTAPAVLRVNPDVDAGTHAKISTGKAENKFGVAIDRAL 180 QFN+E E E L+++A + G AP +RVNPDVDA TH KI+TGK ENKFG+ I+RA Sbjct: 120 RQFNVESEPEMRALSEVASSMGLRAPIAVRVNPDVDARTHEKIATGKKENKFGIPIERAS 179 Query: 181 EIFDRLAKRPGLNLRGVAIHIGSQLTELAPLEAAYKRVGELVAQLRAAGHTITHVDLGGG 240 E++ A PGL + G+ +HIGSQLTEL P E AY +V EL +LRA GH I +DLGGG Sbjct: 180 EVYAEAAALPGLEVMGIDVHIGSQLTELEPFEQAYLKVAELTGRLRAEGHEIRRLDLGGG 239 Query: 241 LGVPY-HAGQTVSTAEEFGAMVARVTQGWNVTLMFEPGRFICGNAGVLVTEVIWVKPAAG 299 LG+PY + + ++GA++ R + EPGR I GN+GVLV+ VI+VK G Sbjct: 240 LGIPYTRSNEAPPLPTDYGALIKRTVGHLGCEIEIEPGRLISGNSGVLVSRVIYVKNGEG 299 Query: 300 NPYVIVDAAMNDLARPALYDAYHE---FEAVEPTGEKFVANIAGPVCETGDTFAMGREID 356 ++I+DAAMNDL RP++Y A+H+ P + ++ GPVCETGDTFA R + Sbjct: 300 RDFLILDAAMNDLVRPSMYGAHHDIVPLAEAAPGTDSQPYDVVGPVCETGDTFAKARALP 359 Query: 357 VVKSGDLAVFRTAGAYGATMASTYNSRALVPEVLVSGDRFAVVADRIQPETIMGAERVPE 416 + GDL FR+AGAYGA MAS YNSR LVPEVLV GD FAV+ R + ++G + +PE Sbjct: 360 PMAEGDLVAFRSAGAYGAVMASEYNSRPLVPEVLVRGDHFAVIRARPTFDEMLGRDSIPE 419 Query: 417 WV 418 W+ Sbjct: 420 WL 421 Lambda K H 0.318 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 530 Number of extensions: 28 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 419 Length of database: 421 Length adjustment: 32 Effective length of query: 387 Effective length of database: 389 Effective search space: 150543 Effective search space used: 150543 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate WP_011841628.1 RSPH17029_RS12035 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.13086.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.13086.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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