Align Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 (characterized)
to candidate WP_011841690.1 RSPH17029_RS12460 methylmalonyl-CoA epimerase
Query= SwissProt::Q3IZP4
(134 letters)
>NCBI__GCF_000015985.1:WP_011841690.1
Length = 134
Score = 272 bits (695), Expect = 1e-78
Identities = 133/134 (99%), Positives = 134/134 (100%)
Query: 1 MIGRLNHVAIAVPDLEAAAAQYRNTLGAEVGAPQDEPDHGVTVIFITLPNTKIELLHPLG 60
MIGRLNHVAIAVPDLEAAAAQYRNTLGAEVGAPQDEPDHGVTVIFITLPNTKIELL+PLG
Sbjct: 1 MIGRLNHVAIAVPDLEAAAAQYRNTLGAEVGAPQDEPDHGVTVIFITLPNTKIELLYPLG 60
Query: 61 EGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFLH 120
EGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFLH
Sbjct: 61 EGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFLH 120
Query: 121 PKDFNGCLVELEQV 134
PKDFNGCLVELEQV
Sbjct: 121 PKDFNGCLVELEQV 134
Lambda K H
0.319 0.141 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 195
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 134
Length adjustment: 15
Effective length of query: 119
Effective length of database: 119
Effective search space: 14161
Effective search space used: 14161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)
Align candidate WP_011841690.1 RSPH17029_RS12460 (methylmalonyl-CoA epimerase)
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.10832.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.10832.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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