Alignments for a candidate for leuC in Cereibacter sphaeroides ATCC 17029

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_011841723.1 RSPH17029_RS12730 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000015985.1:WP_011841723.1
          Length = 475

 Score =  633 bits (1632), Expect = 0.0
 Identities = 309/464 (66%), Positives = 378/464 (81%), Gaps = 2/464 (0%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           +TLY+K++D HVV+++E+ T LLYIDRHLVHEVTSPQAF+GLR  GR VR P KT A  D
Sbjct: 5   RTLYDKIWDDHVVHQSEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVRAPEKTIAVPD 64

Query: 63  HNV-STQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPG 121
           HNV +T+ +D     E +RIQ++ L +N ++FG+  Y ++   QGIVH++GPEQG TLPG
Sbjct: 65  HNVPTTEGRDTKIDNEESRIQVEALDRNARDFGINYYPVSDIRQGIVHIVGPEQGWTLPG 124

Query: 122 MTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAK 181
           MT+VCGDSHTATHGAFGALA GIGTSEVEHVLATQTL Q ++K MK+E+ G   PG+TAK
Sbjct: 125 MTVVCGDSHTATHGAFGALAHGIGTSEVEHVLATQTLIQKKSKNMKVEITGSLRPGVTAK 184

Query: 182 DIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFN 241
           DI L++IG TG+AGGTG+V+E+CG+AIR+LSMEGRMT+CNMAIE GA+AGL+APDE TF 
Sbjct: 185 DITLSVIGLTGTAGGTGYVIEYCGQAIRELSMEGRMTVCNMAIEGGARAGLIAPDEKTFA 244

Query: 242 YVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVN 301
           YV GR HAPKG  ++ A+AYWKTL TD+GA FD VVT++ E+I+P VTWGT+P  V+ + 
Sbjct: 245 YVMGRPHAPKGAAWEAALAYWKTLFTDKGAQFDKVVTIRGEDIAPVVTWGTSPEDVLPIT 304

Query: 302 DNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEI 361
             +P P  F      A A ++L YMGL PG  LT++ ID VFIGSCTN RIEDLRAAAEI
Sbjct: 305 ATVPAPEDFTGGKVEA-ARRSLEYMGLTPGQKLTDIKIDTVFIGSCTNGRIEDLRAAAEI 363

Query: 362 AKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPG 421
            KG+KVAPG++A+VVPGSG V+AQAE EGL +IFI+AGFEWRL GCSMCLAMN D+L+PG
Sbjct: 364 LKGKKVAPGMRAMVVPGSGLVRAQAEEEGLAQIFIDAGFEWRLAGCSMCLAMNPDQLSPG 423

Query: 422 ERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNI 465
           ERCASTSNRNFEGRQGR GRTHLVSP MAAAAA+TGH  D+R++
Sbjct: 424 ERCASTSNRNFEGRQGRNGRTHLVSPGMAAAAAITGHLTDVRDL 467


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 860
Number of extensions: 32
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 475
Length adjustment: 33
Effective length of query: 433
Effective length of database: 442
Effective search space:   191386
Effective search space used:   191386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841723.1 RSPH17029_RS12730 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.16992.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.16992.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.