Align Xylose isomerase (EC 5.3.1.5) (characterized)
to candidate WP_011841913.1 RSPH17029_RS14310 xylose isomerase
Query= reanno::Smeli:SMc03163
(436 letters)
>NCBI__GCF_000015985.1:WP_011841913.1
Length = 433
Score = 673 bits (1737), Expect = 0.0
Identities = 316/434 (72%), Positives = 366/434 (84%), Gaps = 2/434 (0%)
Query: 3 TGFFGDIAKIKYEGPESTNPLAFRHYNPDDVVLGKRMEDHLRFAVAYWHTFVWPGGDPFG 62
T FF I +I+YEG S+N AFRHYNPD+V+LGKRME+HLRFAVA+WH+F WPGGDPFG
Sbjct: 2 TDFFAGIPQIRYEGEGSSNEFAFRHYNPDEVILGKRMEEHLRFAVAWWHSFAWPGGDPFG 61
Query: 63 GQTFERPWFKDSMEAAKLKADVAFEFFQLLGVPYYCFHDADVRPEGRNFAENTSNLNAIV 122
GQTF RPWF D+++ AKLKADVAFE F +LG P++CFHDAD+RPEG FAE+ NL IV
Sbjct: 62 GQTFNRPWFGDTLDLAKLKADVAFEMFDILGAPFFCFHDADIRPEGATFAESKRNLEEIV 121
Query: 123 DYFAGKQGETGVKLLWGTANLFSNRRFMAGAATNPDPDVFAFAAATVKTCIDATQRLDGE 182
D+ + + KLLWGTANLFS+RRFM+GAATNPDPDVFA++AATVK C+DAT +L G
Sbjct: 122 DHIGTRMEGSKTKLLWGTANLFSHRRFMSGAATNPDPDVFAWSAATVKGCMDATMKLGGA 181
Query: 183 NYVLWGGREGYETLLNTDLKRELDQLGRFLNLVVEYKHRIGFKGTILIEPKPQEPTKHQY 242
NYVLWGGREGYETLLNTDL RE + GRFL +VV+YKH+IGF+GTILIEPKPQEP+KHQY
Sbjct: 182 NYVLWGGREGYETLLNTDLTREAENAGRFLQMVVDYKHKIGFQGTILIEPKPQEPSKHQY 241
Query: 243 DYDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQ 302
DYDVATVYGFLKR+GLE EVK+NIEQGHAILAGHSFEHELALA +LGI GSIDMNRNDYQ
Sbjct: 242 DYDVATVYGFLKRFGLEKEVKLNIEQGHAILAGHSFEHELALAASLGILGSIDMNRNDYQ 301
Query: 303 SGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCC 362
SGWDTDQFP+N PEMALAYY +L GGF TGGTNFDAK+RRQS+DPEDL++ H+GGMD C
Sbjct: 302 SGWDTDQFPHNHPEMALAYYEILRAGGFTTGGTNFDAKIRRQSLDPEDLVLAHVGGMDTC 361
Query: 363 ARGLKAAAKMIEDKALSAPLEARYAGWNVPEAKKMLDGGFSLEEIEAWVLKSDVNPQPKS 422
AR LKAAA++ ED +L A ARYAGW PEA+ ML SLEEIEA VL +NP+P+S
Sbjct: 362 ARALKAAARLYEDGSLEAARAARYAGWETPEAQAML--ASSLEEIEARVLAEGINPEPRS 419
Query: 423 GRQELLENVVNRYV 436
GRQE LEN+ NR+V
Sbjct: 420 GRQERLENLWNRFV 433
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 794
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 433
Length adjustment: 32
Effective length of query: 404
Effective length of database: 401
Effective search space: 162004
Effective search space used: 162004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Align candidate WP_011841913.1 RSPH17029_RS14310 (xylose isomerase)
to HMM TIGR02630 (xylA: xylose isomerase (EC 5.3.1.5))
../bin/blast/fastacmd -i /tmp/list.22148.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.22148.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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