Alignments for a candidate for xylB in Cereibacter sphaeroides ATCC 17029

Align Xylulose kinase (EC 2.7.1.17) (characterized)
to candidate WP_011841914.1 RSPH17029_RS14315 xylulokinase

Query= reanno::Dino:3608604
         (480 letters)



>NCBI__GCF_000015985.1:WP_011841914.1
          Length = 478

 Score =  687 bits (1772), Expect = 0.0
 Identities = 346/478 (72%), Positives = 386/478 (80%), Gaps = 1/478 (0%)

Query: 1   MYLGLDLGTSGLKAVLIDENQALVAEATAPLEVARPHPGWSEQMPCDWLAATEAAMAALG 60
           MY+GLDLGTSGLK +LID  Q ++AEA APL V+RPH GWSEQ P DW+AA EA M  L 
Sbjct: 1   MYIGLDLGTSGLKGILIDAEQRVLAEAVAPLAVSRPHEGWSEQSPADWIAAAEAVMDQLA 60

Query: 61  ARADLSGVRAIGLSGQMHGATLLDASHEVLRPCILWNDTRAAAEAAALDADPAFRSVTGN 120
           A+  LS V+ IGLSGQMHGATLLDAS EVLRPCILWNDTR+ AEA ALDADP FR+VTGN
Sbjct: 61  AQG-LSEVKGIGLSGQMHGATLLDASDEVLRPCILWNDTRSHAEAMALDADPRFRAVTGN 119

Query: 121 IVFPGFTAPKLAWVRAHEPDVFDRTALVLLPKDYLRLWLTGEAVAEMSDAAGTSWLDTGA 180
           IVFPGFTAPKL WV  HEP + +R A VLLPKDYLRLWLTGE VAEMSDAAGTSWLD GA
Sbjct: 120 IVFPGFTAPKLVWVERHEPAIRERVAKVLLPKDYLRLWLTGEHVAEMSDAAGTSWLDVGA 179

Query: 181 RDWSAPLLAATGLSRDHMPRLVEGSEVSGTLRDSLADAWGLPRGVPVAGGGGDNAASGIG 240
           RDWS  LLA TGL+R+ MPRLVEGS VSG LR +LA  WGLP+GV VAGGGGDNAAS +G
Sbjct: 180 RDWSDALLAVTGLTREAMPRLVEGSAVSGALRPALAARWGLPQGVAVAGGGGDNAASAVG 239

Query: 241 MGVVRAGDGFVSLGTSGVLFAACDAYAPDPATAVHTFCHALPETWHQMGVILAATDALNW 300
           +GVVRAG+ FVSLGTSGVLFAA D Y P P TAVHTFCHALP  WHQMGVILAATDALNW
Sbjct: 240 VGVVRAGEAFVSLGTSGVLFAANDGYQPAPETAVHTFCHALPGAWHQMGVILAATDALNW 299

Query: 301 FARTCGTDAATLTGGLGPLQAPGRPVFLPYLGGERTPHNDAAIRGAFARIDHAADRDALA 360
           +AR  G +A+ LT  LG LQAPGR +FLPYLGGERTP NDAAIRGAF  ++HA DR A  
Sbjct: 300 YARLVGQEASALTKELGGLQAPGRTLFLPYLGGERTPLNDAAIRGAFTGLEHATDRAAGT 359

Query: 361 RAVLEGVAFAFRDSFDALAATGTRLERLVAVGGGAKSDTWVRMIATLIGLPIDLPQAGDY 420
           RAVLEGV FA RD  DALAATGTRLE L+AVGGG++SD W+  IAT + +P+ LP AGD+
Sbjct: 360 RAVLEGVTFAIRDCRDALAATGTRLESLIAVGGGSRSDYWLSAIATALDVPVLLPAAGDF 419

Query: 421 GGAFGAARLGMMAATGQGAALATRPPIARSLDPVPALADAFGEAHATYRATYTALKGL 478
           GGAFGAARL +MAATG GA +AT PPIAR+L P   L  AF +AHA +RA  TA++ L
Sbjct: 420 GGAFGAARLALMAATGAGAEVATLPPIARTLSPDRGLTAAFDDAHARHRAAQTAIRSL 477


Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 783
Number of extensions: 34
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 478
Length adjustment: 34
Effective length of query: 446
Effective length of database: 444
Effective search space:   198024
Effective search space used:   198024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_011841914.1 RSPH17029_RS14315 (xylulokinase)
to HMM TIGR01312 (xylB: xylulokinase (EC 2.7.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.22014.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.22014.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.