Alignments for a candidate for aroA in Cereibacter sphaeroides ATCC 17029

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate WP_011842229.1 RSPH17029_RS16495 3-phosphoshikimate 1-carboxyvinyltransferase

Query= BRENDA::A6WUV8
         (450 letters)



>NCBI__GCF_000015985.1:WP_011842229.1
          Length = 445

 Score =  500 bits (1287), Expect = e-146
 Identities = 266/445 (59%), Positives = 325/445 (73%), Gaps = 4/445 (0%)

Query: 1   MSHSAPPKPATARRSEALTGEIRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTG 60
           MS   P +P TARRS  L G   IPGDKSISHR+ + G +A GET+ITGLLEG+DV++T 
Sbjct: 1   MSGHGPAQPMTARRSGPLKGRAEIPGDKSISHRALILGAMAVGETQITGLLEGQDVLDTA 60

Query: 61  RAMQAMGAKIRKDGD-AWIINGVGNGCLLQPEAALDFGNAGTGARLTMGLVGTYDMRTSF 119
           +AM+A GA++ + G  AW ++GVG G   +P   +D GN+GTG RL MG + T  +  +F
Sbjct: 61  KAMRAFGAEVIQHGPGAWSVHGVGVGGFAEPAEVIDCGNSGTGVRLVMGAMATSPLTATF 120

Query: 120 IGDASLSKRPMGRVLNPLREMGVQVEAAEGDRMPLTLIGPKTANPITYRVPMASAQVKSA 179
            GDASL KRPMGRV +PL   G +    +G R+P+TL+G     P+ Y VPM SAQVKSA
Sbjct: 121 TGDASLRKRPMGRVTDPLALFGTRAYGRKGGRLPMTLVGAADPVPVRYTVPMPSAQVKSA 180

Query: 180 VLLAGLNTPGVTTVIEPVMTRDHTEKMLQGFGADLSVETDKDGVRHIRITGQGKLIGQTI 239
           VLLAGLN PG T VIE   TRDH+E+ML+GFGA+LSVET  +G + I +TGQ +L  QT+
Sbjct: 181 VLLAGLNAPGQTVVIEREATRDHSERMLRGFGAELSVETGPEG-QIITLTGQPELRPQTV 239

Query: 240 DVPGDPSSTAFPLVAALLVEGSDVTIRNVLMNPTRTGLILTLQEMGADIEVLNARLAGGE 299
            VP DPSS AFP+ AAL+VEGS++ +  V  NPTR GL +TL EMGADI   N R  GGE
Sbjct: 240 AVPRDPSSAAFPVCAALIVEGSEILVPGVSRNPTRDGLYVTLLEMGADIAFENEREEGGE 299

Query: 300 DVADLRVKASKLKGVVVPPERAPSMIDEYPVLAIAAAFAEGETVMDGLDELRVKESDRLA 359
            VADLRV+AS LKGV VPPERAPSMIDEYP+L++ AAFAEG T+M G+ ELRVKESDR+ 
Sbjct: 300 PVADLRVRASALKGVEVPPERAPSMIDEYPILSVVAAFAEGSTIMRGVKELRVKESDRID 359

Query: 360 AVARGLEANGVDCTEGEMSLTVRGRPDGKGLGGGTVATHLDHRIAMSFLVMGLASEKPVT 419
           A+ARGLEA GV   E E +L V G   G+  GG T ATHLDHRIAMSFLV+G+A+E PVT
Sbjct: 360 AMARGLEACGVRIEEDEDTLIVHGM--GRVPGGATCATHLDHRIAMSFLVLGMAAEAPVT 417

Query: 420 VDDSTMIATSFPEFMDMMPGLGAKI 444
           VDD + IATSFP F D+M GLGA +
Sbjct: 418 VDDGSPIATSFPAFTDLMTGLGADL 442


Lambda     K      H
   0.316    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 674
Number of extensions: 42
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 445
Length adjustment: 33
Effective length of query: 417
Effective length of database: 412
Effective search space:   171804
Effective search space used:   171804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_011842229.1 RSPH17029_RS16495 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.32307.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.32307.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.