Alignments for a candidate for deoC in Cereibacter sphaeroides ATCC 17029

Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate WP_011842383.1 RSPH17029_RS17485 deoxyribose-phosphate aldolase

Query= BRENDA::Q9Y315
         (318 letters)



>NCBI__GCF_000015985.1:WP_011842383.1
          Length = 324

 Score =  399 bits (1025), Expect = e-116
 Identities = 201/307 (65%), Positives = 239/307 (77%), Gaps = 2/307 (0%)

Query: 5   NRGTELDLSWISKIQVNHPAVLRRAEQIQARRTVKKEWQAAWLLKAVTFIDLTTLSGDDT 64
           N GT     W  ++QVN  A  RRA  I   R+VKK+ QAAWLL+A+  IDLTTLSGDDT
Sbjct: 13  NPGTPFAPDWFEEMQVNRTAAERRATTISGSRSVKKDHQAAWLLRAIQCIDLTTLSGDDT 72

Query: 65  SSNIQRLCYKAKYPIREDLLKALNMHDKGITTAAVCVYPARVCDAVKALKAAGCNIPVAS 124
              ++RLC KA+ P+R DLL+A+ + D G+TT AVCVYP  V  AV AL+ +G  IPVAS
Sbjct: 73  PGKVRRLCAKARQPVRPDLLEAMGVGDIGLTTGAVCVYPTMVPHAVAALQGSG--IPVAS 130

Query: 125 VAAGFPAGQTHLKTRLEEIRLAVEDGATEIDVVINRSLVLTGQWEALYDEIRQFRKACGE 184
           VA GFPAG T L  RL EI  AVE GA+EID+VI R  VL G W+ALYDE+   R ACGE
Sbjct: 131 VATGFPAGLTPLSQRLAEITYAVEAGASEIDIVITREHVLLGNWQALYDEVAAMRAACGE 190

Query: 185 AHLKTILATGELGTLTNVYKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFF 244
           AH+K ILATGELGTLTNVY+ASM+AM AGSDFIKTSTGKET NAT PV++ MLRA+RD+ 
Sbjct: 191 AHMKAILATGELGTLTNVYRASMVAMQAGSDFIKTSTGKETENATLPVSLTMLRALRDYA 250

Query: 245 WKTGNKIGFKPAGGIRSAKDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQIYHH 304
            +TG +IGFKPAGG+R+AKD+LAWL+L+KEELG  WL+P+LFRIGASTLL DIERQ+ HH
Sbjct: 251 ERTGTRIGFKPAGGLRAAKDALAWLALMKEELGQPWLRPDLFRIGASTLLGDIERQLEHH 310

Query: 305 VTGRYAA 311
           VTGRYA+
Sbjct: 311 VTGRYAS 317


Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 329
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 324
Length adjustment: 28
Effective length of query: 290
Effective length of database: 296
Effective search space:    85840
Effective search space used:    85840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_011842383.1 RSPH17029_RS17485 (deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.5401.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.5401.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.