Alignments for a candidate for asd in Methanococcus maripaludis C5

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_011867962.1 MMARC5_RS00960 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q57658
         (354 letters)



>NCBI__GCF_000016125.1:WP_011867962.1
          Length = 348

 Score =  515 bits (1326), Expect = e-151
 Identities = 251/348 (72%), Positives = 294/348 (84%)

Query: 7   MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENI 66
           MKIKVG+LGATG+VGQRF+Q+L +HP+FEL AL AS+RSAGK Y+DACYW+Q   IPE +
Sbjct: 1   MKIKVGILGATGNVGQRFIQMLENHPVFELEALGASQRSAGKTYEDACYWYQTEAIPEEV 60

Query: 67  KDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLV 126
               V+ TDP  + ++D+DIVFSALP+DLAK  EPEFAK GK +FSNASA RME DVPL+
Sbjct: 61  ASATVVSTDPNDKAYDDIDIVFSALPADLAKTLEPEFAKRGKYVFSNASAMRMEADVPLI 120

Query: 127 IPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAV 186
           IPEVN +H  ++E+Q+  R  DGAIITNPNCSTI AVI+LKPIMDKFG++ V I TMQA+
Sbjct: 121 IPEVNHEHFGMLEVQKSNRCSDGAIITNPNCSTIGAVISLKPIMDKFGIDLVNITTMQAI 180

Query: 187 SGAGYNGVPSMAILDNLIPFIKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAV 246
           SGAGY+GVPSMAILDNL+P+I  EEEKMQTE+LK+LG+++    +  NFKI  SCNRV V
Sbjct: 181 SGAGYSGVPSMAILDNLVPYIGGEEEKMQTEALKILGSIEGNDFKNGNFKIGVSCNRVPV 240

Query: 247 IDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNE 306
           IDGHTESIFVKT E A PEEI +VMD FDPLK LNL +YAKPIV+REE DRPQPRLDRN 
Sbjct: 241 IDGHTESIFVKTTEEATPEEIAKVMDDFDPLKGLNLSSYAKPIVLREENDRPQPRLDRNT 300

Query: 307 GNGMSIVVGRIRKDPIFDVKYTALEHNTIRGAAGASVLNAEYFVKKYI 354
           GNGMSIVVGR+RKDPIF+VKYTALEHNTIRGAAGASVLNAE FV+KY+
Sbjct: 301 GNGMSIVVGRVRKDPIFNVKYTALEHNTIRGAAGASVLNAELFVQKYL 348


Lambda     K      H
   0.317    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 451
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 348
Length adjustment: 29
Effective length of query: 325
Effective length of database: 319
Effective search space:   103675
Effective search space used:   103675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_011867962.1 MMARC5_RS00960 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR00978 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.17647.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17647.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.