Alignments for a candidate for asp-kinase in Methanococcus maripaludis C5

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_011868345.1 MMARC5_RS02925 aspartate kinase

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_000016125.1:WP_011868345.1
          Length = 468

 Score =  616 bits (1589), Expect = 0.0
 Identities = 314/471 (66%), Positives = 390/471 (82%), Gaps = 10/471 (2%)

Query: 1   MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR 60
           M TVMKFGGTSVG+GERIR+VAKIV  +  ED DVVVV SAM++VTN+LVEIS QALDVR
Sbjct: 1   MVTVMKFGGTSVGNGERIRNVAKIVVNKTNEDKDVVVVTSAMTQVTNSLVEISAQALDVR 60

Query: 61  DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPK 120
           DIAK+ +FI+ +R KH  AIE+AI++ +I+ EV K I S I +LEKVL+GV+YLGELTPK
Sbjct: 61  DIAKINNFIEDLRRKHEIAIEQAIENHDIRVEVSKTIQSSINDLEKVLVGVSYLGELTPK 120

Query: 121 SRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLP 180
           S+D+ILSFGERLS+PILSGAIRD+G+ S+ L G +AGIITD+ F  A++ RL+V +++ P
Sbjct: 121 SKDFILSFGERLSAPILSGAIRDMGKHSLFLAGRDAGIITDDTFTCAKILRLDVADKIEP 180

Query: 181 LLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDP 240
           LLK+G IPVVTGF+  TEEG+ITTLGRGGSDYSAAL+G GL A+++EIWTDVSGV + DP
Sbjct: 181 LLKDGFIPVVTGFVAGTEEGHITTLGRGGSDYSAALVGRGLMANMVEIWTDVSGVLSADP 240

Query: 241 RLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITN 300
           R+V   ++IPK+SYIEAMELAYFGAKVLHPRT+EP MEK IP+ +KNTFEPE+EGTLIT+
Sbjct: 241 RMVENVKKIPKMSYIEAMELAYFGAKVLHPRTMEPVMEKKIPLRIKNTFEPENEGTLITD 300

Query: 301 DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETN 360
             E S+ ++KAI+TIK+V LINIFG GMVGVSGTAARIF  LG+   NVILI+QGSSETN
Sbjct: 301 SSETSNGVIKAITTIKDVILINIFGGGMVGVSGTAARIFNVLGKSNANVILITQGSSETN 360

Query: 361 ISLVV--SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAK 418
           IS+V+   E +  K ++ L+ EFG+         +LI+D+S DKDVCV+SVVG+GM+GAK
Sbjct: 361 ISIVIYDGELEAKKCVRELRSEFGEC--------HLIKDISFDKDVCVVSVVGSGMKGAK 412

Query: 419 GIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE 469
           GIAGK+F AV+ESGANIKMIAQGSSE NISFVI+E  L  C++ LH+ F+E
Sbjct: 413 GIAGKLFDAVAESGANIKMIAQGSSETNISFVINEDKLEPCLKNLHKTFVE 463


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 754
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 468
Length adjustment: 33
Effective length of query: 440
Effective length of database: 435
Effective search space:   191400
Effective search space used:   191400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_011868345.1 MMARC5_RS02925 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.8162.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8162.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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