Alignments for a candidate for ilvD in Methanococcus maripaludis C5

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_011869105.1 MMARC5_RS06890 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_000016125.1:WP_011869105.1
          Length = 550

 Score =  697 bits (1800), Expect = 0.0
 Identities = 347/551 (62%), Positives = 436/551 (79%), Gaps = 3/551 (0%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M SD +K+G+ R+P+R+LL  CG +D+D EKPFIG+ NS+T++VPGHIHL+ L++AVK G
Sbjct: 1   MISDNVKKGVIRSPNRALLKACGYSDEDMEKPFIGVVNSFTEVVPGHIHLKTLSDAVKHG 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           V A GG  FEFNT+ ICDGIAM H+GMKYSL SREI+AD VESMA AH  DGLVL+PTCD
Sbjct: 61  VYANGGTPFEFNTIGICDGIAMGHEGMKYSLPSREIIADAVESMARAHGFDGLVLIPTCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           KIVPGM+M A RL+IP IVVTGGPMLPGEF+G+K +LI+++EGVG    G+++E+EL+ +
Sbjct: 121 KIVPGMIMGALRLNIPFIVVTGGPMLPGEFQGKKCELISLFEGVGEYQVGKITEEELKSI 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           E CACPG  SCAGL+TAN+MACLTEALG+SLP CAT HAV ++K +IA+ +G +IV++V+
Sbjct: 181 EECACPGAGSCAGLYTANSMACLTEALGLSLPMCATIHAVDAQKVRIAKKTGSKIVDLVK 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300
           E++KPT I+++EAFENA++VDLALGGSTNTTLHIPAIA EI+   I LD FD LS  +PH
Sbjct: 241 EDVKPTDILTKEAFENAILVDLALGGSTNTTLHIPAIANEIENKFITLDDFDRLSDEVPH 300

Query: 301 IASISPAGEHMMLDLDRAGGIPAVLKTLEDHINRECVTCTGRTVQENIENVKVGHRDVIR 360
           IASI P GEH M+DL  AGGIPAVLK L++ I R   T  GR+  E  E+VK  + DVIR
Sbjct: 301 IASIKPGGEHYMIDLHNAGGIPAVLKVLKEKI-RNTKTVDGRSTLEIAESVKYVNYDVIR 359

Query: 361 PLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGGRI 420
            +++PVH   GL +L+GNLAP G VVK GAV   M  HEGPAKV+NSEDE + AI GG+I
Sbjct: 360 KVEAPVHETAGLRVLKGNLAPNGCVVKIGAVDPKMHKHEGPAKVYNSEDEAIAAILGGKI 419

Query: 421 DEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVGHVSP 479
            EGDV+VIR+EGP GGPGMREML+PTSAI GMGL + VALITDGRFSGG+RGPC+GHVSP
Sbjct: 420 VEGDVVVIRHEGPSGGPGMREMLSPTSAICGMGLDDSVALITDGRFSGGSRGPCIGHVSP 479

Query: 480 EAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSV-KGWLARYRKL 538
           EA   G +AA+ +GDII+ID+  +++ VDL    I+ERL    +    + KG+L+RY +L
Sbjct: 480 EAAAGGLIAAIENGDIIKIDMIEKEINVDLDESVIKERLSKLEEFEPKIKKGYLSRYSRL 539

Query: 539 AGSADTGAVLR 549
             SAD GAVL+
Sbjct: 540 VSSADEGAVLK 550


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1036
Number of extensions: 52
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 550
Length adjustment: 36
Effective length of query: 513
Effective length of database: 514
Effective search space:   263682
Effective search space used:   263682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_011869105.1 MMARC5_RS06890 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.32046.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32046.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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