Alignments for a candidate for ilvE in Methanococcus maripaludis C5

Align branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) (characterized)
to candidate WP_011869290.1 MMARC5_RS07850 branched-chain-amino-acid transaminase

Query= metacyc::MONOMER-11904
         (286 letters)



>NCBI__GCF_000016125.1:WP_011869290.1
          Length = 287

 Score =  457 bits (1175), Expect = e-133
 Identities = 228/284 (80%), Positives = 255/284 (89%)

Query: 1   MKIYLNGEFVEKEQAKISVYDHGLLYGDGVFEGIRVYDGVIFKLKEHIDRLFDSATSLQM 60
           MKIYL+G+FVEKE AK+SVYDHGLLYGDGVFEGIR Y+GV+FKL+EHI+RL+DSA SL M
Sbjct: 1   MKIYLDGKFVEKEDAKVSVYDHGLLYGDGVFEGIRAYEGVVFKLEEHIERLYDSADSLAM 60

Query: 61  DIQTSKDEISKIVIDTIRINELNNAYIRLVITRGVGDLGLDPRKCPKPTIFCIAEPMNPL 120
            I  SK EI +IVI+T++ N+L +AYIRLV+TRG+GDLGLDPRKCP PT+FCIAE M PL
Sbjct: 61  KIPVSKVEIGEIVIETLKTNDLKDAYIRLVVTRGIGDLGLDPRKCPVPTVFCIAEAMKPL 120

Query: 121 LGEDGIKVITSSIRRLPVDVLNPAVKSLNYLNSILAKIQANYAGCDEAFLLDSEGYVAEG 180
           LGEDGIKVITSSIRRLPVDVLNPAVKSLNYLNSILAKIQANYAG +EAFLLDSEGYVAEG
Sbjct: 121 LGEDGIKVITSSIRRLPVDVLNPAVKSLNYLNSILAKIQANYAGVEEAFLLDSEGYVAEG 180

Query: 181 TGDNIFVIKNGKIKTPPVSSSVLKGITRDAVVDLAKEQGYEIIEEKLTLHDLYVADELFI 240
           TGDNIFVIKNGKIKTPP+SSSVLKGITRD VVDLA E GY IIEEK+TLHDL+VADE+FI
Sbjct: 181 TGDNIFVIKNGKIKTPPLSSSVLKGITRDTVVDLANEAGYTIIEEKMTLHDLFVADEIFI 240

Query: 241 TGTAAELAHVVEIDGRVINNREMGVITKKLSEEFKKIRKIMGTK 284
           TGTAAEL HVVEIDGR I N ++G ITK LS+ FK+IR  +G K
Sbjct: 241 TGTAAELIHVVEIDGRKIYNGKLGPITKDLSDRFKEIRSKIGKK 284


Lambda     K      H
   0.319    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 287
Length adjustment: 26
Effective length of query: 260
Effective length of database: 261
Effective search space:    67860
Effective search space used:    67860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_011869290.1 MMARC5_RS07850 (branched-chain-amino-acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.30709.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30709.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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