Alignments for a candidate for argG in Methanococcus maripaludis C5

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_011869348.1 MMARC5_RS08175 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000016125.1:WP_011869348.1
          Length = 397

 Score =  352 bits (903), Expect = e-101
 Identities = 186/387 (48%), Positives = 258/387 (66%), Gaps = 4/387 (1%)

Query: 4   VLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEE-VEEAREKALRTGASKAIALDLK 62
           VLAYSGGLDTS  LK L++ Y  +VI+   D+GQ EE + E  EKA + G  K   +D K
Sbjct: 7   VLAYSGGLDTSCCLKLLEDKYDYKVISVAVDVGQPEEDLIEPEEKAKKFGVLKHYTIDAK 66

Query: 63  EEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQ 122
           EEF +D++F  ++A A+YEGY L  T++ARPLIA  +  +AEE GA AI+HG TGKGNDQ
Sbjct: 67  EEFAKDYIFRAIKANALYEGYPL-STALARPLIAIKIAELAEEVGASAISHGCTGKGNDQ 125

Query: 123 VRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHIS 182
            RFE    A  P+I+++AP R+ +   R E I YA+  GIPVPV  EKP+S+D NL   S
Sbjct: 126 FRFESVMRAKTPEIEIVAPIRDLNLT-RTEEIEYAKEKGIPVPVDLEKPFSIDENLWGRS 184

Query: 183 YEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRL 242
            EGG+LE+P  E PK  F  T DP +A D  EYVE+EF EG PVA+NG+ L+P +L+++ 
Sbjct: 185 IEGGILENPMTETPKECFAWTVDPTDAQDKEEYVEIEFEEGVPVAINGDSLAPVSLIRKA 244

Query: 243 NEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLS 302
           NEI G++GVGRVDIVE+R +G+KSR  YE PG  +L  A +A+E L L RE +  ++M+ 
Sbjct: 245 NEIAGKNGVGRVDIVEDRVLGLKSRENYECPGAMLLITAHKALEQLVLTREEIVFKEMVD 304

Query: 303 PKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDL 362
            KYA+L+Y G W+ P R  L A+ D     + G   +KLYKG++ +VGR++  ++Y +++
Sbjct: 305 SKYADLIYKGLWHEPLRLDLDAFVDKTQTRMNGKVVVKLYKGSMRIVGRESKDAIYNEEM 364

Query: 363 VSFDEAGGYDQKDAEGFIKIQALRLRV 389
           VSF E    DQ++  G +K   L+  +
Sbjct: 365 VSF-ENKEMDQREIVGMVKFHGLQAAI 390


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 431
Number of extensions: 21
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 397
Length adjustment: 31
Effective length of query: 369
Effective length of database: 366
Effective search space:   135054
Effective search space used:   135054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011869348.1 MMARC5_RS08175 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.17067.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17067.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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