Alignments for a candidate for argH in Methanococcus maripaludis C5

Align Argininosuccinate lyase; ASAL; EC 4.3.2.1; Arginosuccinase (uncharacterized)
to candidate WP_011869415.1 MMARC5_RS08535 argininosuccinate lyase

Query= curated2:A6UW73
         (487 letters)



>NCBI__GCF_000016125.1:WP_011869415.1
          Length = 481

 Score =  696 bits (1796), Expect = 0.0
 Identities = 346/479 (72%), Positives = 408/479 (85%)

Query: 7   NILRRGRLGSSTKKEVMNYMTSLSFDKEIFESDIFCDIAHTKMLMEQNIILEEDGIKIIN 66
           NILRRGRLGS+ K++VM + TSL FDKEIFESDI CDIAHT ML+EQN+I EE+G KII 
Sbjct: 2   NILRRGRLGSNVKEDVMKFTTSLEFDKEIFESDILCDIAHTTMLVEQNVISEENGKKIIA 61

Query: 67  ELKKIYNNGMDCLNLDPSLDDIHMVIESELIKNLGEDVAGRMHTGRSRNDEVATDLRMAL 126
           ELKKI   GM+ L+LDPSLDDIHMVIESELIK LGEDVAGRMHTGRSRNDEVATDLR++L
Sbjct: 62  ELKKIAEKGMETLDLDPSLDDIHMVIESELIKELGEDVAGRMHTGRSRNDEVATDLRLSL 121

Query: 127 RDKILTILKLLINMQKNILNLAKEHKETLTIGYTHLQHAQPITFGHHLLSYASPMERDIL 186
           R K+L I+  LI M+KN+L ++ EHKETLT+GYTHLQ AQP+TFGH +LS+ S +ERDI 
Sbjct: 122 RKKVLEIITHLITMEKNMLAVSNEHKETLTVGYTHLQQAQPVTFGHQILSHISAIERDIS 181

Query: 187 RLIDTYKRVNICPLGSGAFATTGFNINRNATKELLGFDSVIENSMDGVASRDFILETMAN 246
           R  DTY R+N+ PLG GA ATTGFN+NR  T+ELLGF  +IENSMDGV+SRDFI+ETMAN
Sbjct: 182 RFFDTYNRINLSPLGCGAMATTGFNLNRKRTQELLGFYGLIENSMDGVSSRDFIVETMAN 241

Query: 247 LSILGTNLSKICEEMVLFSSCEFGTIDLANEYTSTSSIMPQKKNPDVAEIARAKLSTLNG 306
           +S+LGTNLSKICEE+V+FSS EF TI++ANEYTSTSSIMPQKKNPDVAEI RAKLSTLNG
Sbjct: 242 ISMLGTNLSKICEELVVFSSAEFNTIEIANEYTSTSSIMPQKKNPDVAEITRAKLSTLNG 301

Query: 307 NLVTVLTILKALPNTYNRDLQEISPHLWDSVYTTIDTLKIIDGMISTIKVNADRMKELTE 366
            LVTVLTI+KALPNTYNRDLQEISPHLW SVYT ID+++++DGMIST+KVN +RMKE  E
Sbjct: 302 ELVTVLTIMKALPNTYNRDLQEISPHLWKSVYTLIDSIQMVDGMISTVKVNKERMKENAE 361

Query: 367 KNYSTATELADTLVRECNIPFRTAHGIVGEVVRLSIENNKNMNEVIRDVLDKFNLKLDDS 426
           KNYSTATELADTLVREC I FR AHGIVGE+V+ SIE    + E+I +VL+K NL L   
Sbjct: 362 KNYSTATELADTLVRECGIAFRMAHGIVGELVKRSIEEKVEIKEIISEVLEKNNLSLSQE 421

Query: 427 KIEKALNPMENVKMRKVIGGPAPEEVERAINSYYSRIENYEKEVNDKIEKIEIIKNNLL 485
           KI+ AL+P ENVK+R VIGGPAPEEVERAI+S+  +I  Y++ +++KI +IE +K NLL
Sbjct: 422 KIDTALDPFENVKLRNVIGGPAPEEVERAISSFNEKISAYKENLDEKIAEIESVKENLL 480


Lambda     K      H
   0.317    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 755
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 481
Length adjustment: 34
Effective length of query: 453
Effective length of database: 447
Effective search space:   202491
Effective search space used:   202491
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_011869415.1 MMARC5_RS08535 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.30837.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30837.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.