Alignments for a candidate for argG in Burkholderia vietnamiensis G4

Align argininosuccinate synthase (characterized)
to candidate WP_011881448.1 argininosuccinate synthase

Query= CharProtDB::CH_024687
         (447 letters)



>NCBI__GCF_000016205.1:WP_011881448.1
          Length = 445

 Score =  709 bits (1829), Expect = 0.0
 Identities = 349/441 (79%), Positives = 388/441 (87%)

Query: 1   MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRA 60
           M+TIL+ LP GQ++GIAFSGGLDTSAAL WM+ KGAVPYAYTANLGQPDE+DYDAIP+RA
Sbjct: 1   MSTILESLPTGQKVGIAFSGGLDTSAALHWMKLKGAVPYAYTANLGQPDEDDYDAIPKRA 60

Query: 61  MEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE 120
           +EYGA  ARLIDCR QLVAEGIAA+Q GAFH TT G+TYFNTTP+GRAVTGTMLVAAMKE
Sbjct: 61  IEYGAAGARLIDCRAQLVAEGIAALQSGAFHITTAGVTYFNTTPIGRAVTGTMLVAAMKE 120

Query: 121 DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG 180
           DGVNIWGDGSTYKGNDIERFYRYGLL N +L+IYKPWLD  FIDELGGR EMSEFM   G
Sbjct: 121 DGVNIWGDGSTYKGNDIERFYRYGLLVNPDLKIYKPWLDQTFIDELGGRAEMSEFMNQAG 180

Query: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR 240
           F Y+MS EKAYSTDSN+LGATHEAKDLE L S +KIVNPIMGV FW + VKI AEEVTVR
Sbjct: 181 FAYRMSAEKAYSTDSNLLGATHEAKDLESLESGIKIVNPIMGVAFWRDDVKIAAEEVTVR 240

Query: 241 FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL 300
           FE G PVALNG  F D VE++LEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPG+ALL
Sbjct: 241 FEAGQPVALNGVEFKDQVELLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL 300

Query: 301 HIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEV 360
           +IAYERL+TGIHNEDTIEQY  +GR+LGRLLYQGRWFD QA+MLR++ QRWVA  ITGEV
Sbjct: 301 YIAYERLVTGIHNEDTIEQYRENGRRLGRLLYQGRWFDPQAIMLRETAQRWVARAITGEV 360

Query: 361 TLELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLF 420
            +ELRRGNDYSIL+T S NLTY+PERL+MEK  S FSP DRIGQLTMRNLDITDTR+KL 
Sbjct: 361 KIELRRGNDYSILSTKSPNLTYQPERLSMEKVASTFSPRDRIGQLTMRNLDITDTRDKLR 420

Query: 421 GYAKTGLLSSSAASGVPQVEN 441
            YA+ GLL+   +S +PQ+++
Sbjct: 421 VYAQVGLLTPGESSALPQIKS 441


Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 663
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 445
Length adjustment: 32
Effective length of query: 415
Effective length of database: 413
Effective search space:   171395
Effective search space used:   171395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011881448.1 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.10411.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10411.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.