Alignments for a candidate for thrB in Stutzerimonas stutzeri A1501

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate WP_011911359.1 PST_RS00575 homoserine kinase

Query= SwissProt::P29364
         (316 letters)



>NCBI__GCF_000013785.1:WP_011911359.1
          Length = 317

 Score =  424 bits (1089), Expect = e-123
 Identities = 220/316 (69%), Positives = 241/316 (76%), Gaps = 1/316 (0%)

Query: 1   MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQD 60
           MSVFTPL+R  LEAFLAPY LGRLRDF+GIA GSENSNFF+SLE GE+VLTL+ERGP QD
Sbjct: 1   MSVFTPLQRDELEAFLAPYRLGRLRDFQGIAAGSENSNFFISLEQGEYVLTLIERGPRQD 60

Query: 61  LPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEV 120
           LPFFIELLDVLH  GLPVPYALRT  GEALR L  KPALLQPRL G+H  +PN HHC EV
Sbjct: 61  LPFFIELLDVLHRAGLPVPYALRTEQGEALRELAEKPALLQPRLPGKHVVEPNPHHCAEV 120

Query: 121 GDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAER 180
           G LL  LH ATR  ILER SDRGL WM EQG +LA  LPE    LL   LAEIA L  + 
Sbjct: 121 GRLLARLHLATRDHILERASDRGLDWMQEQGPSLALSLPEDQLPLLRDGLAEIAELRPKL 180

Query: 181 PALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPA 240
            ALPRANLHADLFRDNVLF+G HL G+IDFYNACSG MLYDLAI +NDWCS+ +G +D  
Sbjct: 181 LALPRANLHADLFRDNVLFEGSHLTGVIDFYNACSGPMLYDLAIAVNDWCSHPNGEIDGE 240

Query: 241 RARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQ-DVLIHDPAEFE 299
           R+  LLAAY+  R FT  EAE W  MLRVACVRFWLSRLIAA+   G+ DV + DP EF 
Sbjct: 241 RSEPLLAAYSALRRFTPAEAELWQPMLRVACVRFWLSRLIAAQRHEGKADVQVKDPGEFH 300

Query: 300 IRLAQRQNVEIHLPFA 315
             LA RQ  +  LPFA
Sbjct: 301 RLLAARQRPQSVLPFA 316


Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 385
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 317
Length adjustment: 27
Effective length of query: 289
Effective length of database: 290
Effective search space:    83810
Effective search space used:    83810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_011911359.1 PST_RS00575 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.25019.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25019.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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