Alignments for a candidate for argE in Stutzerimonas stutzeri A1501

Align Acetylornithine deacetylase; AO; Acetylornithinase; N-acetylornithinase; NAO; EC 3.5.1.16 (characterized)
to candidate WP_011911512.1 PST_RS01425 acetylornithine deacetylase

Query= SwissProt::P23908
         (383 letters)



>NCBI__GCF_000013785.1:WP_011911512.1
          Length = 383

 Score =  362 bits (929), Expect = e-104
 Identities = 190/379 (50%), Positives = 244/379 (64%), Gaps = 5/379 (1%)

Query: 5   LPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPV-PGTRNKFN 63
           +P   E + ALIA PS+S T+   DQSN  +I LLA W  +LGF  E   V PG   KFN
Sbjct: 3   IPSLKEQFAALIAAPSVSCTQPGWDQSNRPVIELLAAWLGELGFACETPEVAPG---KFN 59

Query: 64  MLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDA 123
           +LAS G G GGL+LAGH+DTVPFD   WT DP  L E D + YGLG+ DMKGFFA I++A
Sbjct: 60  LLASYGSGPGGLVLAGHSDTVPFDGELWTADPLRLREADDRWYGLGSCDMKGFFALIIEA 119

Query: 124 LRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHKGHI 183
           +R +     ++PL ILAT DEE+SM+GAR  A         A+IGEPT L+PVR HKG +
Sbjct: 120 VRPLLEQPFRRPLLILATCDEESSMSGARALAAAGQPLGRAALIGEPTGLRPVRLHKGIM 179

Query: 184 SNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLNLGH 243
              I I GQSGHSS+PA G +A+E MH  IG ++ LR   +  Y    F VP PTLN G 
Sbjct: 180 MERIDILGQSGHSSNPAYGHSALEAMHGVIGEMMTLRRQWQAEYDNPLFDVPKPTLNFGC 239

Query: 244 IHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIP 303
           IHGGD  NRIC  C L  D+RPLPGM   +L G++   L P++E+   ++ +  L P +P
Sbjct: 240 IHGGDNPNRICGQCALEFDLRPLPGMDPQQLRGIIRQRLQPLAEQHQVKIDLAPLFPAVP 299

Query: 304 GYECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQPDEYLE 362
            +E P   +LV + E+L G + E V + TEAP++Q L C TLVLGPG I  AHQPDEYL+
Sbjct: 300 PFEQPAESELVRLAERLTGHRAEAVAFATEAPYLQQLGCETLVLGPGDIACAHQPDEYLQ 359

Query: 363 TRFIKPTRELITQVIHHFC 381
              I+PT +L+ ++I H+C
Sbjct: 360 LERIEPTVQLLRRMIEHYC 378


Lambda     K      H
   0.320    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 464
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 383
Length adjustment: 30
Effective length of query: 353
Effective length of database: 353
Effective search space:   124609
Effective search space used:   124609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_011911512.1 PST_RS01425 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.1712.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1712.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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