Alignments for a candidate for argG in Geotalea uraniireducens Rf4

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_011937173.1 GURA_RS01145 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000016745.1:WP_011937173.1
          Length = 406

 Score =  506 bits (1302), Expect = e-148
 Identities = 245/394 (62%), Positives = 308/394 (78%), Gaps = 1/394 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           KIVLAYSGGLDTSIILKWLK  Y  EVI F+AD+GQG+E+   R+KA  TGA K    DL
Sbjct: 8   KIVLAYSGGLDTSIILKWLKNEYGCEVITFSADLGQGDELTPIRDKAFATGADKVYIDDL 67

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEFVRDFVFPM RA A+YEG+YLLGTSIARPLIAK  + IA+ EGA+A++HGATGKGND
Sbjct: 68  REEFVRDFVFPMFRANAIYEGHYLLGTSIARPLIAKRQMEIAKIEGADAVSHGATGKGND 127

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHI 181
           QVRFEL  Y   P I VIAPWR+W    R+ +I YA+ + IP+PVT+++P+S D NLLHI
Sbjct: 128 QVRFELGYYHFNPAITVIAPWRDWKLNSRQALINYAKKNDIPIPVTKKRPWSSDRNLLHI 187

Query: 182 SYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQR 241
           S+EG +LED WAE P+ M+ +T+ PE+AP+ P+YVE+EF  G+ VAV+GE +SPA LL  
Sbjct: 188 SFEGAILEDTWAEAPENMYVLTKSPEKAPNKPQYVEIEFRNGNAVAVDGEAMSPAQLLAH 247

Query: 242 LNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDML 301
           LN IGG HG+GRVD++ENR VGMKSRGVYETPGGTIL  A  AVE +T+DREV+H RD L
Sbjct: 248 LNFIGGEHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQITMDREVMHLRDSL 307

Query: 302 SPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKA-PKSLYRQ 360
            P+YAE+VY G+W++PERE LQ   D   ++V GVAR+KLYKG+   VGRK+   SL+  
Sbjct: 308 IPRYAEMVYNGYWFSPEREMLQTMIDESQKTVNGVARVKLYKGHCRTVGRKSETDSLFNL 367

Query: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVE 394
           D  +F++   Y+QKDAEGFIK+ +LRLR+R+L++
Sbjct: 368 DFATFEKDQVYNQKDAEGFIKLNSLRLRIRSLMQ 401


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 490
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 406
Length adjustment: 31
Effective length of query: 369
Effective length of database: 375
Effective search space:   138375
Effective search space used:   138375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011937173.1 GURA_RS01145 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31311.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.31311.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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