Align LL-diaminopimelate aminotransferase (EC 2.6.1.83) (characterized)
to candidate WP_011937183.1 GURA_RS01195 LL-diaminopimelate aminotransferase
Query= BRENDA::Q74GT3
(410 letters)
>NCBI__GCF_000016745.1:WP_011937183.1
Length = 410
Score = 788 bits (2034), Expect = 0.0
Identities = 381/410 (92%), Positives = 393/410 (95%)
Query: 1 MAKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAV 60
MA IND+YLKLKAGYLFPEIGRRVR FA ANPSAKVIRLGIGDVTRPLAPAV+KAFH AV
Sbjct: 1 MALINDNYLKLKAGYLFPEIGRRVRAFAEANPSAKVIRLGIGDVTRPLAPAVLKAFHAAV 60
Query: 61 DDLATTENFAGYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFA 120
DDL TT+NFAGYGPEQGYDWLINAIIEKSYKPLGV LKT+EMFISDGSKCDCANILDIFA
Sbjct: 61 DDLGTTDNFAGYGPEQGYDWLINAIIEKSYKPLGVSLKTDEMFISDGSKCDCANILDIFA 120
Query: 121 LDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMPCTEENGFIPSLPTEKVDII 180
LDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMPC EEN FIPSLPTEKVDII
Sbjct: 121 LDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMPCNEENHFIPSLPTEKVDII 180
Query: 181 YLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKC 240
YLCFPNNPTGTVA++AELKKWVDYA ANDAVIFFDAAYEAFITDP IPHSIYEIEGAKKC
Sbjct: 181 YLCFPNNPTGTVASRAELKKWVDYANANDAVIFFDAAYEAFITDPEIPHSIYEIEGAKKC 240
Query: 241 AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQK 300
AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTT TGE+YSFNKLWLRRTTTKFNGASYPVQ+
Sbjct: 241 AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTSTGERYSFNKLWLRRTTTKFNGASYPVQR 300
Query: 301 AAAAVYSDEGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWD 360
AA AVYSDEGW+Q KEIIDYYMENARIIREG+ AGLTVYGGVNAPYIWLKTP GM+SWD
Sbjct: 301 AAEAVYSDEGWKQTKEIIDYYMENARIIREGMKEAGLTVYGGVNAPYIWLKTPAGMTSWD 360
Query: 361 FFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNLK 410
FFDKLL ECNVVGTPGSGFGPSGEG+FRLSAFGHRENVIEAVERIKKNLK
Sbjct: 361 FFDKLLTECNVVGTPGSGFGPSGEGYFRLSAFGHRENVIEAVERIKKNLK 410
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 723
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 410
Length adjustment: 31
Effective length of query: 379
Effective length of database: 379
Effective search space: 143641
Effective search space used: 143641
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_011937183.1 GURA_RS01195 (LL-diaminopimelate aminotransferase)
to HMM TIGR03542 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))
../bin/blast/fastacmd -i /tmp/list.30673.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.30673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.