Alignments for a candidate for asd in Geotalea uraniireducens Rf4

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_011937976.1 GURA_RS05295 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q51344
         (370 letters)



>NCBI__GCF_000016745.1:WP_011937976.1
          Length = 365

 Score =  524 bits (1349), Expect = e-153
 Identities = 262/368 (71%), Positives = 300/368 (81%), Gaps = 4/368 (1%)

Query: 3   RVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSIDE 62
           +VGLIGWRGMVGSVL+QRM EE DF  IEPVFF+TS  G   P    +   LKDA  I E
Sbjct: 2   KVGLIGWRGMVGSVLLQRMQEENDFAGIEPVFFSTSQAGQPAP---MNAGTLKDASDIAE 58

Query: 63  LKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQA 122
           LK LDVILTCQGGDYT  + P+LR+ GWQGYWIDAAS+LRME +AVI+LDPVNR VID A
Sbjct: 59  LKKLDVILTCQGGDYTKAIHPELRKTGWQGYWIDAASTLRMEPNAVIILDPVNRNVIDAA 118

Query: 123 LDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAA 182
           L  G +++IGGNCTVSLMLMALGGLF AGLVEW+++MTYQAASGAGA NMRELL QMG  
Sbjct: 119 LAKGQKDFIGGNCTVSLMLMALGGLFRAGLVEWITSMTYQAASGAGAPNMRELLSQMGVL 178

Query: 183 HASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSREE 242
           H SVA+ L NP+SAILDIDR+V  TLRS+A PT+ FGAPL G+++PWID+E+ +GQSREE
Sbjct: 179 HGSVAELLKNPSSAILDIDRQVTATLRSDALPTKEFGAPLAGNVLPWIDREVEDGQSREE 238

Query: 243 WKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHNPW 302
           WK  AETNKIL     PIPVDGICVRV AMRCHSQALTIKLNKDVP+ DIE LI   N W
Sbjct: 239 WKGYAETNKILGT-TTPIPVDGICVRVSAMRCHSQALTIKLNKDVPIADIENLIKNDNQW 297

Query: 303 VKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPLRR 362
           VK VPN +  S+  LTPAAV+G+L+VP+GR+RK+ MG QYL AFT GDQLLWGAAEPLRR
Sbjct: 298 VKFVPNTKADSLANLTPAAVSGSLTVPIGRVRKMKMGPQYLSAFTCGDQLLWGAAEPLRR 357

Query: 363 MLRILLER 370
           MLR+LLE+
Sbjct: 358 MLRVLLEK 365


Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 492
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 365
Length adjustment: 30
Effective length of query: 340
Effective length of database: 335
Effective search space:   113900
Effective search space used:   113900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011937976.1 GURA_RS05295 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.13161.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13161.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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