Alignments for a candidate for asd in Geotalea uraniireducens Rf4

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_011937977.1 GURA_RS05300 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000016745.1:WP_011937977.1
          Length = 339

 Score =  365 bits (937), Expect = e-106
 Identities = 188/339 (55%), Positives = 245/339 (72%), Gaps = 5/339 (1%)

Query: 1   MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60
           MS+ +N+A+ GATGAVG  M+E L+ER FPV ++  LAS RS G+   FNGK V V+ + 
Sbjct: 1   MSKLWNIAVVGATGAVGNQMIECLEERNFPVGKIKYLASARSAGEVMEFNGKPVLVEELT 60

Query: 61  EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120
              +  + IALFSAGG+ S ++ P AA AG V IDN+S +R D D+PLVVPEVNP AIA 
Sbjct: 61  HDSFEGIDIALFSAGGDRSREFCPSAARAGAVCIDNSSAWRMDPDVPLVVPEVNPHAIAR 120

Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180
           + N+ IIANPNCSTIQM+VALKP++D   I+RI V+TYQ+VSG GK  IDEL  QT +LL
Sbjct: 121 YTNKGIIANPNCSTIQMVVALKPLHDYAAIKRIVVSTYQAVSGTGKKAIDELRVQTGELL 180

Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240
           NG PA+ + +  +IAFNC+PQID F  NGYTKEEMKMV+ET+KI  +  I    T VRVP
Sbjct: 181 NGRPAKCDIYPHRIAFNCLPQIDSFEPNGYTKEEMKMVFETKKIM-EAEIRTTATTVRVP 239

Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIEL---FRGADFPTQVRDAGGKDHVLVGR 297
           VFYGH+E+V++ET   I   + M++L++  G+++        +P  + DA G+D  LVGR
Sbjct: 240 VFYGHSESVNIETEKKITVAKAMELLKRAPGVDVVDDVANGVYPMPI-DAAGQDLTLVGR 298

Query: 298 VRNDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
           +R D S  +G+NLWVVADN+RKGAATNAVQIAE+L+  Y
Sbjct: 299 IREDDSIENGLNLWVVADNIRKGAATNAVQIAEILIEKY 337


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 330
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 339
Length adjustment: 28
Effective length of query: 309
Effective length of database: 311
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011937977.1 GURA_RS05300 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.25966.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25966.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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