Alignments for a candidate for cmutase in Geotalea uraniireducens Rf4

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_011938377.1 GURA_RS07435 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000016745.1:WP_011938377.1
          Length = 358

 Score =  304 bits (778), Expect = 3e-87
 Identities = 159/363 (43%), Positives = 237/363 (65%), Gaps = 6/363 (1%)

Query: 1   MSEADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWV 60
           M +   L  LR  IDSLD+R+L+L++ERA    EV R+K  S     ++ F+ P RE  +
Sbjct: 1   MQKKKTLSDLRKEIDSLDDRMLELLNERASRVIEVGRLKAGS-----KSDFHVPSREREI 55

Query: 61  LKHIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVI 120
            + ++  N+GP  ++ +  +FREI+S+ LALE P++VA+ GP+ TF+  AA++ FG S  
Sbjct: 56  YERLIAQNRGPFPSQALKSVFREIISASLALEAPMKVAFFGPKATFTHMAAMQQFGLSAE 115

Query: 121 SKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHL 180
             P  +I  VF EV  G   +GVVPVENSTEG V+HTLD F+E ++ +  EV L IHH+L
Sbjct: 116 LVPQKSIPAVFEEVEKGRALYGVVPVENSTEGMVSHTLDMFMESELKVNAEVLLEIHHYL 175

Query: 181 LVGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIA 240
           L   T + + I ++ SH Q +AQCR WL  + PNV  V V+S A AA+ V  ++ +AAIA
Sbjct: 176 L-SRTGRMEDIKKVCSHQQPIAQCRNWLAENLPNVPVVDVASTAVAAQIVSEDYTAAAIA 234

Query: 241 GDMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELL 300
            ++AA +Y L  + E+IED+  N TRFLIIG +    +GDDKTS++ S++++ G L+ +L
Sbjct: 235 SELAASMYDLKVVRERIEDQVNNFTRFLIIGKKMAEKSGDDKTSLMFSVKDEVGILYHML 294

Query: 301 MPFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSY 360
            PF   GI+L++IE+RP +   W Y+FF+D +GH  DP+I   ++++      +KVLGSY
Sbjct: 295 EPFAKRGINLSKIESRPLKKKAWEYIFFLDLVGHISDPVIAEAVQELKGCCQFVKVLGSY 354

Query: 361 PKA 363
           P+A
Sbjct: 355 PRA 357


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 314
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 358
Length adjustment: 29
Effective length of query: 336
Effective length of database: 329
Effective search space:   110544
Effective search space used:   110544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011938377.1 GURA_RS07435 (prephenate dehydratase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.25506.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.25506.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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