Alignments for a candidate for aroA in Geotalea uraniireducens Rf4

Align 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (characterized)
to candidate WP_011938379.1 GURA_RS07445 3-phosphoshikimate 1-carboxyvinyltransferase

Query= BRENDA::A6TL04
         (425 letters)



>NCBI__GCF_000016745.1:WP_011938379.1
          Length = 428

 Score =  452 bits (1163), Expect = e-132
 Identities = 227/417 (54%), Positives = 307/417 (73%)

Query: 8   EKLEGKMTVPGDKSISHRAIMLSSISKGTSRVKGFLRGEDCLSTISCFRDLGIDIEDRGT 67
           + + G++ VPGDKSISHR+IML SI++GT+ V GFLRGED ++T++ FR +G+D+ D G 
Sbjct: 10  QSVRGEIAVPGDKSISHRSIMLGSIARGTTTVCGFLRGEDNMATLNAFRAMGVDVRDDGE 69

Query: 68  EIIIQGKGLHGLSEPLNVLDAGNSGTTIRLISGILAGQKFLTIVTGDASLRKRPMERIAT 127
            + I+GKGL GLSEP +VLD GNSGT++RL++G+LAGQ+F +++TGD  LR RPM+R+  
Sbjct: 70  TLRIEGKGLAGLSEPTDVLDCGNSGTSMRLMTGLLAGQRFFSVLTGDQYLRNRPMKRVLE 129

Query: 128 PLRKMGAFIEGRDYGNLAPLVIRGGNLKGMDYASPVSSAQVKSAILLAGLYGEGDTIVRE 187
           PL +MGA I GR  G+ APL + G  L G+ YASPVSSAQVKSAILLAGLY +G+T V E
Sbjct: 130 PLSRMGATIFGRAGGDKAPLAVVGRGLTGVTYASPVSSAQVKSAILLAGLYADGETEVTE 189

Query: 188 KITSRDHTEKMLKGLGANISTDQGVTRLGKSELYGQSIEVPGDISSAAFFMAGAAALPGS 247
              SRDH+E+ML+  GA+I T  G  ++   EL G+ I VPGDISSAAFF+  A  +PGS
Sbjct: 190 PHLSRDHSERMLRYFGADIETFAGGVKVRGRELTGRDITVPGDISSAAFFIVAALIVPGS 249

Query: 248 FLITEGVGLNPTRTGIIDVLRDMGGDIEIHNLRQSGGEEIGDIMIRGKKLYGTEIGKEII 307
            L+ +GVG+NPTRTGIID+L  MGG IE+ N R+  GE + D+++R  +L G EIG +++
Sbjct: 250 ELLIKGVGVNPTRTGIIDILTAMGGSIELLNCREISGEPVADLLVRASELKGIEIGGDLV 309

Query: 308 PRLIDEIPVLAIIAATAEGKTIITGAEELKVKESNRITAMVTEMQKVGIKVTELPDGMEI 367
           PR IDE PV+ + A+ AEG+T+I  A EL+VKE++RI AM   ++K G+ V E  +GME+
Sbjct: 310 PRAIDEFPVICVAASCAEGRTVIRDARELRVKETDRIAAMAVNLRKAGVDVVETENGMEL 369

Query: 368 EGGQVITGGRVESYGDHRIAMAMAICGLFAQEPIKINDSQCIDISFPNFEEKLKAVV 424
            G + + G   ES+GDHRIAM+M I GL A+  I +ND++CI  SFPNF   L+ VV
Sbjct: 370 IGVERLEGCTAESFGDHRIAMSMLIAGLAARGEITVNDTECIATSFPNFIALLEKVV 426


Lambda     K      H
   0.317    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 592
Number of extensions: 24
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 428
Length adjustment: 32
Effective length of query: 393
Effective length of database: 396
Effective search space:   155628
Effective search space used:   155628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_011938379.1 GURA_RS07445 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.9549.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.9549.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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