Alignments for a candidate for aroC in Geotalea uraniireducens Rf4

Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 (characterized)
to candidate WP_011938713.1 GURA_RS09220 chorismate synthase

Query= SwissProt::O66493
         (398 letters)



>NCBI__GCF_000016745.1:WP_011938713.1
          Length = 393

 Score =  430 bits (1106), Expect = e-125
 Identities = 226/399 (56%), Positives = 287/399 (71%), Gaps = 15/399 (3%)

Query: 7   RFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSG 66
           R+LTAGESHG  LTAI+EGIPA L LSEE+IN +L RRQ GYGRGGRM IEKD  EILSG
Sbjct: 3   RYLTAGESHGPQLTAIIEGIPAGLSLSEEQINIDLARRQCGYGRGGRMLIEKDQVEILSG 62

Query: 67  VRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRD 126
           VR+GKT+GSPI L +RNRDWENW EKM+         +  TR RPGHADL G +KYN  D
Sbjct: 63  VRWGKTIGSPITLCVRNRDWENWHEKMSPHERFHDDKIRVTRSRPGHADLPGAMKYNHHD 122

Query: 127 LRNILERASARETAARVAVGAVCKKFLSEFGIKIGSFVVSIGQKEVEELKDKSYFANPEK 186
           +RNILER+SARETA RVAVGAV K  LS+F I++  FV  +G   ++ ++          
Sbjct: 123 VRNILERSSARETAVRVAVGAVAKALLSQFEIEVCGFVAELG--GIKAIRPSL------P 174

Query: 187 LLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHIQWD 246
           L +  + A  SEL       +EE K  ID V+++G+++GGV EV A+ VPPGLGSH+QWD
Sbjct: 175 LAALKDMAAKSELFTYDKSVEEEMKRLIDTVRDEGDTVGGVIEVNAVGVPPGLGSHVQWD 234

Query: 247 RRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGW-------SEGKGYFRHSN 299
           R++D R+A A++SIQA KGVEIG+GF+AA   GS+VHDEI +        E  G++R SN
Sbjct: 235 RKLDARLAMAVLSIQAFKGVEIGIGFQAAASTGSKVHDEIFYDSARIAHGEQSGFYRKSN 294

Query: 300 NLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVV 359
           N GG EGGI+NG  IVVR AMKPIPTL  PLRSVDI +KE  +A  ER+D+ AVPAASVV
Sbjct: 295 NAGGIEGGISNGEEIVVRAAMKPIPTLYKPLRSVDIVSKEPYEATVERSDVCAVPAASVV 354

Query: 360 GEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF 398
            EA++AI LADA + K GGD + E+K+ ++ Y++++++F
Sbjct: 355 AEAVVAIELADAFMVKFGGDSITEIKRNYQSYLDYLRAF 393


Lambda     K      H
   0.317    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 482
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 393
Length adjustment: 31
Effective length of query: 367
Effective length of database: 362
Effective search space:   132854
Effective search space used:   132854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_011938713.1 GURA_RS09220 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.16705.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.16705.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.