Align Chorismate mutase; CM; Monofunctional chorismate mutase AroQ(f); EC 5.4.99.5 (characterized)
to candidate WP_011939353.1 GURA_RS12670 chorismate mutase
Query= SwissProt::Q57696
(99 letters)
>NCBI__GCF_000016745.1:WP_011939353.1
Length = 91
Score = 56.2 bits (134), Expect = 9e-14
Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 7/83 (8%)
Query: 8 IRKKIDEIDNKILKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHN-- 65
+R++ID +D+++L++ ER +LA + EIK L +P+ DP REK I+ R+ +E N
Sbjct: 6 LREQIDNLDSELLRIFNERANLALKIGEIKKGLALPVYDPSREKKIFKRM----QEENPG 61
Query: 66 -VDENIGIKIFQILIEHNKALQK 87
+D+ +++F+ +I+ ++ L++
Sbjct: 62 PLDDQAIVRLFERVIDESRRLER 84
Lambda K H
0.315 0.136 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 99
Length of database: 91
Length adjustment: 10
Effective length of query: 89
Effective length of database: 81
Effective search space: 7209
Effective search space used: 7209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.6 bits)
S2: 39 (19.6 bits)
Align candidate WP_011939353.1 GURA_RS12670 (chorismate mutase)
to HMM PF01817 (CM_2)
../bin/blast/fastacmd -i /tmp/list.2177.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.2177.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.