Alignments for a candidate for trpA in Geotalea uraniireducens Rf4

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_011940102.1 GURA_RS16690 tryptophan synthase subunit alpha

Query= uniprot:H0BV16
         (269 letters)



>NCBI__GCF_000016745.1:WP_011940102.1
          Length = 267

 Score =  224 bits (570), Expect = 2e-63
 Identities = 119/246 (48%), Positives = 165/246 (67%), Gaps = 5/246 (2%)

Query: 1   MSRIASTFSALQAQGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMAD 60
           MSRIA+TF+ L  Q  KAL+ ++TAG P  + T  L+  + ++GAD+IELGVPFSDPMAD
Sbjct: 1   MSRIATTFANLAKQNEKALVTFITAGDPDLETTEKLILELEKSGADLIELGVPFSDPMAD 60

Query: 61  GPVIQKAGEKALSLGIGMVQVLDHVREFRKRNNTTPVVLMGYANPVERYDQKHGEGAFVR 120
           GP IQ + E+AL  G  + ++L  V+  R++    P++LMGY NPV  Y    G   FV 
Sbjct: 61  GPTIQLSSERALCAGTTLPKILTLVKSVRQQTEI-PLILMGYYNPVFLY----GIERFVA 115

Query: 121 DSAAAGVDGVLIVDYPPEECEAFAASLRAHGMDLIFLLAPTSTDERMAEVARVASGYVYY 180
           D+ +AGVDGVL+VD PPEE E F A+    G+D+IFLL PTS + R+ +VA + SG++YY
Sbjct: 116 DAVSAGVDGVLLVDLPPEEAEEFKAAADREGLDVIFLLTPTSDEARIRKVANLGSGFIYY 175

Query: 181 VSLKGVTGSGALDTAAVEQMLPRIRQHVTIPVGVGFGIRDAATAQAIGKVADAVVIGSRI 240
           VS+ GVTG+       V   + +IR+HVT+P+ VGFGI D   A  +  VAD VV+GS +
Sbjct: 176 VSVTGVTGARTSVADTVFPDVKKIREHVTLPLVVGFGISDPVQAGRVAAVADGVVVGSAL 235

Query: 241 IQLIED 246
           ++L E+
Sbjct: 236 VKLFEE 241


Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 233
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 267
Length adjustment: 25
Effective length of query: 244
Effective length of database: 242
Effective search space:    59048
Effective search space used:    59048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_011940102.1 GURA_RS16690 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.27004.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.27004.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.