Alignments for a candidate for prs in Geotalea uraniireducens Rf4

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_011940488.1 GURA_RS18750 ribose-phosphate pyrophosphokinase

Query= SwissProt::P14193
         (317 letters)



>NCBI__GCF_000016745.1:WP_011940488.1
          Length = 316

 Score =  351 bits (901), Expect = e-101
 Identities = 178/314 (56%), Positives = 238/314 (75%), Gaps = 4/314 (1%)

Query: 7   DKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTS 66
           +  +++FS NSNP LA++I   + V LG+  V  FSDGE+ + I E++RG D Y++QST 
Sbjct: 2   EDKIRVFSGNSNPALAEKICASLKVPLGQAKVKTFSDGEIMVEIGENVRGRDIYVVQSTC 61

Query: 67  DPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAG 126
            P N ++MELLIM+DALKRASA TI +V+PYYGYARQDRKA  R PIT+KL A+L+ TAG
Sbjct: 62  SPTNNNLMELLIMMDALKRASAATITVVMPYYGYARQDRKAAPRTPITSKLVADLITTAG 121

Query: 127 ATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGK---NLEDIVIVSPDHGGVTRAR 183
           A RV+ +DLHA QIQGFF+IP+D+L   P++ ++ + +     + IV+VSPD GG  RAR
Sbjct: 122 ADRVVTVDLHAGQIQGFFNIPVDNLYAAPVIIDHLKSRFPNEHDKIVMVSPDAGGTERAR 181

Query: 184 KLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVEN 243
             A RL   +A+IDKRR  PNVAEVM+++G+++GKTAI++DD+IDTAGT+T AANAL  +
Sbjct: 182 AFAKRLGCTLAVIDKRRTAPNVAEVMHLIGDVKGKTAIILDDMIDTAGTLTQAANALKAH 241

Query: 244 GAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEE-KKIERFKQLSVGPLLAEA 302
           GA  +YAC TH VLSGPA+ERINNS I+ +V+T++I L E+  + E+ K LSV  LLAEA
Sbjct: 242 GADTIYACATHGVLSGPAIERINNSVIERIVITDTIPLGEKADQTEKIKVLSVANLLAEA 301

Query: 303 IIRVHEQQSVSYLF 316
           I R+HE +SVS LF
Sbjct: 302 IRRIHEDESVSSLF 315


Lambda     K      H
   0.319    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 316
Length adjustment: 27
Effective length of query: 290
Effective length of database: 289
Effective search space:    83810
Effective search space used:    83810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_011940488.1 GURA_RS18750 (ribose-phosphate pyrophosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.21788.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.21788.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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