Alignments for a candidate for ilvE in Geotalea uraniireducens Rf4

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_011940734.1 GURA_RS20105 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_000016745.1:WP_011940734.1
          Length = 357

 Score =  401 bits (1031), Expect = e-116
 Identities = 192/339 (56%), Positives = 251/339 (74%)

Query: 19  DPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKAYV 78
           D +QL FGR+FTD M ++++ A KGW D RI PY P  +DPA +V+HY Q +FEGLKAY 
Sbjct: 19  DESQLGFGRIFTDRMLMVEWKAGKGWVDARIEPYAPFVLDPACLVFHYAQEIFEGLKAYK 78

Query: 79  SEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSLYI 138
             D  V LFRPE N  R N S DRLC+P + EE  L+G+++LV ++KDW+P+AEGTSLYI
Sbjct: 79  WTDGTVALFRPEMNARRFNLSADRLCMPTVPEELFLKGIEELVQLEKDWVPSAEGTSLYI 138

Query: 139 RPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVESEFVRAVKGGTGNAKT 198
           RP +IA EP LGV  S  Y   +I+SPVG+YY  G KPVKI VE +FVRA  GGTG AKT
Sbjct: 139 RPAMIAVEPVLGVKPSDHYYFYVIMSPVGAYYASGFKPVKIMVEDKFVRATPGGTGEAKT 198

Query: 199 AGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKINGEIVTPMLNGSILE 258
            GNYASSLKA   A++KGF QVLWLDG+ K+YIEEVG+MN+FF     +VT  L GSIL 
Sbjct: 199 GGNYASSLKAGLEAKKKGFDQVLWLDGVHKRYIEEVGAMNMFFAYEDRVVTAPLEGSILH 258

Query: 259 GITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVISPVGELIWQDE 318
           GITR+SV+ L+  +GL+V ERKI + E++   + G ++EAFG+GTAAV++PVG L ++DE
Sbjct: 259 GITRDSVLKLVASFGLKVEERKIDVIELMNDIRSGKVKEAFGSGTAAVVTPVGALSYKDE 318

Query: 319 TLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEVA 357
            L++++GE G++ +KLYDT+T IQ G + D FGW  ++A
Sbjct: 319 CLTVDDGEVGKLTQKLYDTLTAIQYGKMEDSFGWIKKIA 357


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 20
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 357
Length adjustment: 29
Effective length of query: 334
Effective length of database: 328
Effective search space:   109552
Effective search space used:   109552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_011940734.1 GURA_RS20105 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.10524.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.10524.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.