Alignments for a candidate for hisA in Geotalea uraniireducens Rf4

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_011940835.1 GURA_RS20620 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::BFirm:BPHYT_RS17685
         (250 letters)



>NCBI__GCF_000016745.1:WP_011940835.1
          Length = 245

 Score =  279 bits (713), Expect = 4e-80
 Identities = 140/246 (56%), Positives = 181/246 (73%), Gaps = 2/246 (0%)

Query: 1   MLLIPAIDLKDGQCVRLKQGDMDQATIFSEEPAAMARHWVDRGARRLHLVDLNGAFAGKP 60
           M++IPAIDLK+G+CVRL+QG MD+ T+F + PA  AR W  +G   LH+VDL+GAFAGKP
Sbjct: 1   MIVIPAIDLKEGKCVRLEQGLMDKDTVFCDNPAEQAREWERQGGELLHIVDLDGAFAGKP 60

Query: 61  KNEDAIRAIIEEVGGEIPVQLGGGIRDLNTIERYLDDGLSYVIIGTAAVKNPGFLQDACT 120
            N+ AI AI++ V   IP QLGGGIRD+ TI+ YLD GLS VI+GTAA +NP  +++AC 
Sbjct: 61  ANKSAIEAIVKAV--RIPTQLGGGIRDIETIKAYLDLGLSRVILGTAAQRNPKLVEEACK 118

Query: 121 AFGGHIIVGLDAKDGKVATDGWSKLTGHEVADLARKFEDYGCESIIYTDIGRDGMLQGIN 180
            F G I+VG+DAK+G VA  GW+++T     DLAR FE YG  ++IYTDI RDGM+QG N
Sbjct: 119 LFPGRIVVGIDAKNGLVAVQGWAEVTDVYAVDLARLFEGYGVTAVIYTDISRDGMMQGPN 178

Query: 181 IEATVRLARAVKIPVIASGGLSNLTDIESLCEVEDEGIEGVICGRAIYSGDLDFAAAQTL 240
           I+AT  LA A+ IPVIASGG+S+L DIE+L  VE  G+ GVI G+AIY+G +  A A  L
Sbjct: 179 IDATRALAEAISIPVIASGGVSSLKDIENLMAVESAGVTGVITGKAIYTGAIKLAEAVAL 238

Query: 241 ADRLRE 246
             + R+
Sbjct: 239 TKKCRQ 244


Lambda     K      H
   0.319    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 223
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 245
Length adjustment: 24
Effective length of query: 226
Effective length of database: 221
Effective search space:    49946
Effective search space used:    49946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_011940835.1 GURA_RS20620 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.4486.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.4486.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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