Alignments for a candidate for hisC in Geotalea uraniireducens Rf4

Align histidinol-phosphate aminotransferase (EC 2.6.1.9) (characterized)
to candidate WP_011941059.1 GURA_RS21795 histidinol-phosphate transaminase

Query= reanno::pseudo6_N2E2:Pf6N2E2_3251
         (350 letters)



>NCBI__GCF_000016745.1:WP_011941059.1
          Length = 347

 Score =  241 bits (615), Expect = 2e-68
 Identities = 137/345 (39%), Positives = 200/345 (57%), Gaps = 9/345 (2%)

Query: 9   VKNLVPYVPGEQPK-LTRLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDPNSDLLKG 67
           +  +  YVPG QP+     +KLNTNEN Y PSPK L A+  E+ + LR YPD  S   + 
Sbjct: 8   IARMAGYVPGYQPEDPAAYIKLNTNENAYPPSPKVLEAIMAEVGEGLRRYPDAASRAGRE 67

Query: 68  AVARYYGVQSNQVFLGNGSDEVLAHIFHGLLQHDQPLLFPDISYSFYPVYCGLYGIQFDA 127
           A AR YG     + + NGSDEVL ++          + +   SYS+Y     + G +   
Sbjct: 68  AAARLYGFLPEWIVMANGSDEVLNNLIRAFADEGDEIAYVYPSYSYYATLAEIQGARVKT 127

Query: 128 VPLDAQFQIDPADYAKPNGGIIF--PNPNAPTGCLLALEAVEQILKANPDSVVVVDEAYI 185
             L   +++  A++ +   G IF   NPNAP G   + E +E+ L      ++VVDE Y 
Sbjct: 128 YGLTDDWKL--ANFPERYDGKIFFLTNPNAPYGFTFSREFIEE-LAGRVAGMLVVDETYA 184

Query: 186 DFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPELIEALERIKNSFNSYPLD 245
           DF G+TA+ LV +Y N++VT+TLSKS SLAG+R+GLAV  PE+I AL++I++ +N   LD
Sbjct: 185 DFAGDTALDLVRKYENVVVTRTLSKSYSLAGMRLGLAVARPEVIAALDKIRDHYN---LD 241

Query: 246 RLANVGGAAAFDDREYFDRTCRLVIEHREWVVAQLQAKGFEVLPSAANFIFARHPRHDAA 305
           RLA     AA  D++YF    R + E R+W  A+L+   + V+PS+ N++F   P  D A
Sbjct: 242 RLAQAAAVAALGDQDYFREAVRKICETRDWFSAELRKLRYSVIPSSGNYVFTTPPDRDGA 301

Query: 306 GLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIEALGEL 350
            +   L ++ ++VRHF    +A  LRISIGT E+ +  +EAL E+
Sbjct: 302 RVYQGLFDRKILVRHFSDPNLAHGLRISIGTREEMEKTMEALREI 346


Lambda     K      H
   0.320    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 371
Number of extensions: 20
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 347
Length adjustment: 29
Effective length of query: 321
Effective length of database: 318
Effective search space:   102078
Effective search space used:   102078
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011941059.1 GURA_RS21795 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.515.in -d ../tmp/NCBI__GCF_000016745.1/orgs.faa -p T > /tmp/gapView.515.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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