GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Methanococcus aeolicus Nankai-3

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate WP_011972972.1 MAEO_RS01250 histidinol-phosphate transaminase

Query= curated2:A9AA96
         (371 letters)



>NCBI__GCF_000017185.1:WP_011972972.1
          Length = 371

 Score =  586 bits (1511), Expect = e-172
 Identities = 280/370 (75%), Positives = 334/370 (90%)

Query: 1   MSIDDKVRAIVKEFKAYVPGKSKEEIARNYGIDPEKIIKLGSNENPWGCSPKIAEKLMDE 60
           M+ID+K+R IVKEFKAYVPGKSKEEIARNY I+P++IIKLGSNENPWG SPKI E+++ E
Sbjct: 1   MTIDNKIRHIVKEFKAYVPGKSKEEIARNYNINPDEIIKLGSNENPWGSSPKIKEEILKE 60

Query: 61  VSKLHQYPQPINPELMEEISKFTKMPVENIIVGGDGADEVIDNIMRILIDEDDEVIIPIP 120
           +  +HQYP+P+NP LMEE+SKFT +P ENI+VGGDGADE+ID +MRILID+DDEVIIPIP
Sbjct: 61  LPNIHQYPEPVNPILMEELSKFTNIPKENIVVGGDGADEIIDTMMRILIDKDDEVIIPIP 120

Query: 121 TFTQYAISAKIHGANIKWAKFDEENGFKLDAESVLNNITEKTKAIFLCTPNNPTGNVIPT 180
           TFTQY ISAKI+GANIK+AKFD+E  FKLD +SVLNNIT+KTK IFLCTPNNPTGN+I  
Sbjct: 121 TFTQYRISAKIYGANIKYAKFDKEKDFKLDVDSVLNNITDKTKIIFLCTPNNPTGNIIDK 180

Query: 181 EDIKKIVESTDALVMIDHAYIEYSKEEYDLTNWALKYDNVLVLRTFSKVFGLAGQRVGYG 240
           +DI+KI+ STDALVMIDHAYIEYSKEEYDLT +ALKYDNVL+LRTFSKVFGLAGQR+GYG
Sbjct: 181 KDIEKIINSTDALVMIDHAYIEYSKEEYDLTEFALKYDNVLILRTFSKVFGLAGQRIGYG 240

Query: 241 VTSKKLVDYMMRIKPIFSLTRASQVSAITALQDKEFFKKCLKEGIESREEIYNGLKKFKQ 300
           +TSKK+VDYMMR+KPIFS+TR SQ+ AITAL+DKEFF+K   +GI+S E +YNGLK+FK+
Sbjct: 241 ITSKKIVDYMMRVKPIFSITRLSQICAITALRDKEFFEKSKNDGIKSMEILYNGLKEFKE 300

Query: 301 LEVYPTEANYMLVKVKNGMNSSEFCEALLKKGVIVRDCYSFEGLEPYYFRVSIGTFEENE 360
           L+VYP+EANY+LV+VKNGM+S EFC  LLK+GVIVRDC SFEGL+  Y RV+IGTFEE+ 
Sbjct: 301 LKVYPSEANYLLVEVKNGMSSGEFCVELLKRGVIVRDCKSFEGLDGEYVRVAIGTFEEDR 360

Query: 361 RFLKIMSEIV 370
           RFL+I+ EIV
Sbjct: 361 RFLEILKEIV 370


Lambda     K      H
   0.317    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 554
Number of extensions: 21
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 371
Length adjustment: 30
Effective length of query: 341
Effective length of database: 341
Effective search space:   116281
Effective search space used:   116281
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_011972972.1 MAEO_RS01250 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.22206.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22206.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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