Alignments for a candidate for argG in Methanococcus aeolicus Nankai-3

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_011973338.1 MAEO_RS03095 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000017185.1:WP_011973338.1
          Length = 401

 Score =  322 bits (825), Expect = 1e-92
 Identities = 176/394 (44%), Positives = 250/394 (63%), Gaps = 6/394 (1%)

Query: 4   VLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEE-VEEAREKALRTGASKAIALDLK 62
           VLAYSGGLDTS  LK L+E Y  +V+    D+GQ EE + +  EKA   G      +D K
Sbjct: 11  VLAYSGGLDTSCCLKLLEENYNYKVVTACVDVGQPEEEITKPVEKAKEYGVFAHYTIDAK 70

Query: 63  EEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQ 122
           EEF ++++F  ++A A+YEGY L  T++ARPLI   LV +A+E  AEAI+HG TGKGNDQ
Sbjct: 71  EEFAKEYIFRAIKANAIYEGYPL-STALARPLIGLKLVELAKELNAEAISHGCTGKGNDQ 129

Query: 123 VRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHIS 182
            RFE    A  P++K+IAP R+ +   R E I YA+ HGIP+P T+ K YS+D NL   S
Sbjct: 130 FRFESIMRAKAPEVKIIAPIRDLNLT-RSEEIEYAKKHGIPIP-TESKKYSIDENLWGRS 187

Query: 183 YEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRL 242
            EGG LEDP  E P+  +  T++P E    PEYVE+EF  G PV +N +      L++  
Sbjct: 188 VEGGELEDPMFETPEEAYGWTKNPMECT-GPEYVEIEFENGIPVKINNKEYDAVELIREA 246

Query: 243 NEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLS 302
           N+I GR+GVGRVDI+E+R +G+KSR  YE PG  +L  A +A+E LTL RE +  ++++ 
Sbjct: 247 NKIAGRNGVGRVDIIEDRILGLKSRENYECPGAIMLITAHKALEQLTLTREEIKFKEIVD 306

Query: 303 PKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQDL 362
             YA+L+Y G W+ P R  L A+ D     V+G   +KLY G++ VVG+++  +L+ Q+L
Sbjct: 307 STYADLIYKGLWHEPLRLDLDAFIDKTQERVSGKVVVKLYAGSIRVVGKESNYALFSQEL 366

Query: 363 VSFDEAGGYDQKDAEGFIKIQALRLRVRALVERE 396
           VSF++    DQ++  G +K   L+  +   V+ +
Sbjct: 367 VSFEDK-EIDQRETIGAVKFHGLQASIYESVKNK 399


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 427
Number of extensions: 21
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 401
Length adjustment: 31
Effective length of query: 369
Effective length of database: 370
Effective search space:   136530
Effective search space used:   136530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011973338.1 MAEO_RS03095 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.2520.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2520.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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