Align O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) (characterized)
to candidate WP_011973397.1 MAEO_RS03390 O-phospho-L-seryl-tRNA:Cys-tRNA synthase
Query= BRENDA::Q59072
(377 letters)
>NCBI__GCF_000017185.1:WP_011973397.1
Length = 385
Score = 577 bits (1488), Expect = e-169
Identities = 271/373 (72%), Positives = 323/373 (86%), Gaps = 1/373 (0%)
Query: 2 DKYKNLTRSLTREFINLNPIQRGGILPKEAKKAVYEYWDGYSVCDYCHGRLDEVTCPPIK 61
DKYKN+ R++ RE I+LNPIQRGG LP E+KKA+YEYWDGYSVCDYC GRLD+V PPI
Sbjct: 9 DKYKNIRRTMGRELIDLNPIQRGGELPVESKKAIYEYWDGYSVCDYCGGRLDKVETPPIC 68
Query: 62 DFLEDIAKFLNMDCARPTHGAREGKFIVMHAICKEGDYVVLDKNAHYTSYVAAERAKLNV 121
++L D++KFL MD RPTHGARE KFIVMH++C EGD+VVLD NAHYTS+VA ERAKLN
Sbjct: 69 EYLHDVSKFLGMDFTRPTHGARESKFIVMHSVCNEGDFVVLDGNAHYTSFVALERAKLN- 127
Query: 122 AEVGYEEEYPTYKINLEGYKEVIDNLEDKGKNVGLILLTHVDGEYGNLNDAKKVGKIAKE 181
+E+ + YPT+++N E Y EVIDNLEDK K +GLILLTHVDG YGNL DA+KVGKIAK+
Sbjct: 128 SEIVEHDGYPTFRVNPEKYAEVIDNLEDKNKPIGLILLTHVDGNYGNLADAEKVGKIAKQ 187
Query: 182 KGIPFLLNCAYTVGRMPVNGKEVKADFIVASGHKSMAASAPCGILAFSEEFSDKITKTSE 241
KG PFLLNCAY+VGR+PVNGK++ ADF+ SGHKSMA+++PCG+++ E++DK+ +TS+
Sbjct: 188 KGYPFLLNCAYSVGRLPVNGKKLNADFLAISGHKSMASASPCGLVSIKGEYADKVFRTSK 247
Query: 242 KFPVKEIEMLGCTSRGLPIVTLMASFPHVVERVKKWDEELKKTRYVVDELEKIGFKQLGI 301
PVKEIEMLGCTSRG P+++LMASF HV ERVK WD E+KKTR+VVDELEKIGF QLGI
Sbjct: 248 THPVKEIEMLGCTSRGAPLISLMASFSHVAERVKNWDNEVKKTRFVVDELEKIGFNQLGI 307
Query: 302 KPKEHDLIKFETPVLDEIAKKDKRRGFFFYDELKKRGIGGIRAGVTKEIKMSVYGLEWEQ 361
KPK+HDLIKFETP+LDEIA+KDKRRG+FFY+ELKKRGIGGI+ G TKEIKMSVYGL WEQ
Sbjct: 308 KPKQHDLIKFETPILDEIAQKDKRRGYFFYEELKKRGIGGIKRGTTKEIKMSVYGLSWEQ 367
Query: 362 VEYVVNAIKEIVE 374
V YVV+ IKEIVE
Sbjct: 368 VRYVVDNIKEIVE 380
Lambda K H
0.318 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 625
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 385
Length adjustment: 30
Effective length of query: 347
Effective length of database: 355
Effective search space: 123185
Effective search space used: 123185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_011973397.1 MAEO_RS03390 (O-phospho-L-seryl-tRNA:Cys-tRNA synthase)
to HMM TIGR02539 (pscS: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73))
../bin/blast/fastacmd -i /tmp/list.20003.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20003.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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