Alignments for a candidate for hisF in Methanococcus aeolicus Nankai-3

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate WP_011973453.1 MAEO_RS03680 imidazole glycerol phosphate synthase subunit HisF

Query= BRENDA::A4WHB6
         (251 letters)



>NCBI__GCF_000017185.1:WP_011973453.1
          Length = 275

 Score =  237 bits (605), Expect = 2e-67
 Identities = 126/273 (46%), Positives = 176/273 (64%), Gaps = 27/273 (9%)

Query: 4   RVIPCLDMDGKAGVVVKGVNFEGVREVGDPVEMAVRYEEEGADEIAILDITATPEGRSTF 63
           R+IPCLD+  K G VVKG NF  +R+ GDPVE++  Y E+GADE+  LDI A+ E R   
Sbjct: 5   RIIPCLDI--KNGRVVKGTNFVELRDAGDPVELSKIYNEQGADELVFLDIGASHEKRDII 62

Query: 64  VESVRRVAEAVSIPVLVGGGVRGIEDAAALFKAGADKVSVNTAAVKNPRLVSEIAREFGS 123
              V + A+ V IP+ VGGG+R  +D   + +AGADK+SVNTAA+ NP L+ + +  +G+
Sbjct: 63  EHLVEKTADQVFIPLTVGGGIRTTDDFRRILRAGADKISVNTAAIHNPDLIKQSSELYGA 122

Query: 124 QSTVVAIDAK---------------------LVGGRY---EVFVRGGKEPTGLDAVEWAK 159
           Q  VVAID+K                     +   +Y   EVF+ GG++ TG+DA+EWAK
Sbjct: 123 QCVVVAIDSKRHYVNEEDLDSKQLEDKNVVKVDKNKYCWFEVFIYGGRKETGIDAIEWAK 182

Query: 160 KVEELGAGEILLTSIDKDGTRLGYDVELIRRVAEAVKIPVIASGGAGALEHFYEAAAAG- 218
             EELGAGEILLTS+D DGT+ GYD+EL + ++  +K+PVIASGG GA +H ++    G 
Sbjct: 183 TAEELGAGEILLTSMDADGTKDGYDIELTKSISTHIKLPVIASGGCGAPQHIHQVFEYGK 242

Query: 219 ADAVLAASLFHFRVLTISEVKRYLRQRGVEVRL 251
           ADA L AS+ H+R  T+ E+K+Y   + + +RL
Sbjct: 243 ADAALMASILHYREYTVGELKKYCMDKNIPMRL 275


Lambda     K      H
   0.318    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 209
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 275
Length adjustment: 25
Effective length of query: 226
Effective length of database: 250
Effective search space:    56500
Effective search space used:    56500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_011973453.1 MAEO_RS03680 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.325.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.325.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.