Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate WP_011974730.1 SMED_RS02640 homoserine kinase
Query= reanno::Korea:Ga0059261_3253 (319 letters) >NCBI__GCF_000017145.1:WP_011974730.1 Length = 326 Score = 284 bits (726), Expect = 2e-81 Identities = 146/310 (47%), Positives = 199/310 (64%), Gaps = 2/310 (0%) Query: 1 MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60 MAVYT ++ + L FLA Y+VG L S KGIAEGVENSN+L+ TTR +ILTLYEKRV A Sbjct: 1 MAVYTDITEDELIRFLAAYEVGSLTSYKGIAEGVENSNFLLHTTRGAYILTLYEKRVNAD 60 Query: 61 DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120 DLP+F+GL+ HLA +GL P + G + L+GRPA +I FL G+ L P R Sbjct: 61 DLPFFLGLMHHLAQRGLSCPLPLPRADGKLLGTLSGRPAAVISFLEGMWLRKPEAQHCRE 120 Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180 G A+A MH+A F L RPN++ V+ W+PL+ D++ GL D++ +A + Sbjct: 121 VGRALALMHQASEGFRLKRPNALSVEGWRPLWRNSEARADEVQAGLKDEIATELAFLEEH 180 Query: 181 WTRNDFDRCAIHADLFPDNVLMRGDQVTGLIDFYFACTDIRVYDLAVMHSAWSFDAHGRN 240 W R IHADLFPDNV GD+++GLIDFYFAC D YD+A+ ++W F+ G + Sbjct: 181 WPR-ALPEGVIHADLFPDNVFFLGDRLSGLIDFYFACNDFLAYDIAICLNSWCFEKDG-S 238 Query: 241 YDPAVGDALIAGYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADALVMRKDP 300 Y+ G AL++GYE+ LT E A P LA G+ +RF L+R +DWL TP ALV++KDP Sbjct: 239 YNITKGMALLSGYESVRNLTAEEVEALPLLARGSALRFFLTRLYDWLTTPPGALVVKKDP 298 Query: 301 LAYVRRLKHY 310 L Y+ +++ + Sbjct: 299 LEYLTKIRFH 308 Lambda K H 0.323 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 296 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 319 Length of database: 326 Length adjustment: 28 Effective length of query: 291 Effective length of database: 298 Effective search space: 86718 Effective search space used: 86718 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (23.1 bits)
Align candidate WP_011974730.1 SMED_RS02640 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))
../bin/blast/fastacmd -i /tmp/list.4766.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4766.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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