Alignments for a candidate for ilvI in Sinorhizobium medicae WSM419

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_011976138.1 SMED_RS10015 acetolactate synthase 3 large subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>NCBI__GCF_000017145.1:WP_011976138.1
          Length = 592

 Score =  625 bits (1613), Expect = 0.0
 Identities = 311/575 (54%), Positives = 417/575 (72%), Gaps = 6/575 (1%)

Query: 13  SSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHA 72
           S    +M GAEI++ AL + GVE+++GYPGGAVL IYDE+ +Q   +HILVRHEQ A H 
Sbjct: 2   SGTENQMTGAEIVLQALKDNGVEHIFGYPGGAVLPIYDEIFQQEDIQHILVRHEQGAGHM 61

Query: 73  ADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECD 132
           A+GYAR+TGKVGV LVTSGPG TNAVT +  A +DSIP+V I+G VPT  IG DAFQECD
Sbjct: 62  AEGYARSTGKVGVMLVTSGPGATNAVTPLQDALMDSIPLVCISGQVPTSLIGSDAFQECD 121

Query: 133 TVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKS 192
           TVGITRP  KHN+LV+DV +LA  I +AF +A +GRPGPVVVDIPKD+      Y  P +
Sbjct: 122 TVGITRPCTKHNWLVRDVNELARVIHEAFRVAQSGRPGPVVVDIPKDIQFATGAYTPPSA 181

Query: 193 I-DMRSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLA--NASDELRQLAALTGHP 249
           +   +SY P  +G   +I +AVAL++ A +P IY+GGGV+ +   A+  LR+L  LT  P
Sbjct: 182 VPTQKSYQPKTQGDLKKIEEAVALMKSARQPVIYSGGGVINSGPQAAHFLRELVELTDFP 241

Query: 250 VTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTS 309
           +T+TLMGLGA+P + K ++GMLGMHGTYEAN+AM +CDV+I IGARFDDR+ G    F+ 
Sbjct: 242 ITSTLMGLGAYPASGKNWLGMLGMHGTYEANLAMHDCDVMICIGARFDDRITGRLNAFSP 301

Query: 310 QARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIE 369
            ++K IHIDIDPSSI+K V+VD+PI+G+V  VL++++   +A+     R  L  WW+ I 
Sbjct: 302 NSKK-IHIDIDPSSINKNVRVDVPIIGDVAAVLEDMVRLWRAAAKTVDRTRLEDWWKSIT 360

Query: 370 QWRSVDCLKYDRSSEIIKPQYVVEKIWELTKG-DAFICSDVGQHQMWAAQFYKFDEPRRW 428
           +WR+ + L Y  S+++I PQY +++++ELTK  D +I ++VGQHQMWAAQF+ F+EP RW
Sbjct: 361 KWRARNSLAYTPSADVIMPQYAIQRLYELTKDRDTYITTEVGQHQMWAAQFFGFEEPNRW 420

Query: 429 INSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLN 488
           + SGGLGTMG G P A+G++ A P+  V+ I G+ SIQMCIQE+S  +QY  PVKI  LN
Sbjct: 421 MTSGGLGTMGYGFPAAVGVQVAHPDSLVIDIAGDASIQMCIQEMSCAVQYGLPVKIFILN 480

Query: 489 NGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRL 548
           N Y+GMVRQWQ++ + NR SHSY +A+PDFVKLAEAYG VG+R EK  +++ A+++    
Sbjct: 481 NQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGGVGIRCEKPGELDEAIKQMIDT 540

Query: 549 KDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAE 583
               +F D +     N +PM+ +GK  +EMLL  E
Sbjct: 541 PAPVIF-DCRVANLANCFPMIPSGKAHNEMLLPDE 574


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 962
Number of extensions: 38
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 592
Length adjustment: 37
Effective length of query: 548
Effective length of database: 555
Effective search space:   304140
Effective search space used:   304140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_011976138.1 SMED_RS10015 (acetolactate synthase 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.3477.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3477.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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