Alignments for a candidate for asp-kinase in Clostridium kluyveri DSM 555

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_011989176.1 CKL_RS02980 aspartate kinase

Query= BRENDA::P08495
         (408 letters)



>NCBI__GCF_000016505.1:WP_011989176.1
          Length = 399

 Score =  344 bits (882), Expect = 3e-99
 Identities = 172/403 (42%), Positives = 276/403 (68%), Gaps = 6/403 (1%)

Query: 1   MGLIVQKFGGTSVGSVEKIQNAANRAIAEKQKGHQVVVVVSAMGKSTDELVSLAKAISDQ 60
           M +IVQK+GG+SVG+ EKI+N AN  + + + G+ +VVVVSAMG +TD+L++LA+ I+D 
Sbjct: 1   MAIIVQKYGGSSVGTPEKIKNVANTVVNKVKAGNSLVVVVSAMGDTTDDLIALARQITDN 60

Query: 61  PSKREMDMLLATGEQVTISLLSMALQEKGYDAVSYTGWQAGIRTEAIHGNARITDIDTSV 120
           P KRE+D LL+TGE ++ +LL+MA+++ GYDA+SYT +Q GI+T   +G + I DI+   
Sbjct: 61  PDKRELDALLSTGEMMSCALLAMAIKDLGYDAISYTAYQIGIKTSGQYGKSLIDDINADR 120

Query: 121 LADQLEKGKIVIVAGFQGMTEDCEITTLGRGGSDTTAVALAAALKADKCDIYTDVPGVFT 180
           +   L++GKI+I AGFQG+ ++ ++TTLGRGGSDTTAVA+A  L    C+IYTDV G+++
Sbjct: 121 MKKSLDEGKIIIAAGFQGINDEGDVTTLGRGGSDTTAVAIAVKLNG-VCEIYTDVDGIYS 179

Query: 181 TDPRYVKSARKLEGISYDEMLELANLGAGVLHPRAVEFAKNYQVPLEVRSSTETEAGTLI 240
            DPR  K+A+KL+ I Y+EMLEL++LGA V+H R++E A+ Y +P+ V  S     GT+I
Sbjct: 180 VDPRKYKNAKKLDEIDYEEMLELSSLGAQVMHSRSIELAQKYNIPVYVGLSNSNIRGTVI 239

Query: 241 EEESSME-QNLIVRGIAFEDQITRVTIYGLTSGLTTLSTIFTTLAKRNINVDIIIQTQAE 299
           +   +M  ++  V G+A  D+   +T+  + + +  +S +F ++A++ INVD+I QT   
Sbjct: 240 KGVDTMNLESKPVTGLATSDEDIAITVKDIKNDINIISNLFESVAEKKINVDMISQTAPI 299

Query: 300 D-KTGISFSVKTEDADQTVAVLEEYKDALEFEKIETESKLAKVSIVGSGMVSNPGVAAEM 358
           D K  +SF++  +D  + + +L+ Y D     +I+ +  + K SIVG GM +  GV A+M
Sbjct: 300 DGKVNVSFTIPKDDMKECLTILKSYFDN---NQIDIDKDITKFSIVGIGMKTTSGVVAKM 356

Query: 359 FAVLAQKNILIKMVSTSEIKVSTVVSENDMVKAVESLHDAFEL 401
           F +  + NI +KM++TSEI+++  + + D +K +  + + F L
Sbjct: 357 FKLFRENNIAVKMITTSEIRITCAIKQEDKMKTISIIAEKFNL 399


Lambda     K      H
   0.313    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 321
Number of extensions: 14
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 399
Length adjustment: 31
Effective length of query: 377
Effective length of database: 368
Effective search space:   138736
Effective search space used:   138736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_011989176.1 CKL_RS02980 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.11182.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11182.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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