Alignments for a candidate for ilvE in Bradyrhizobium sp. BTAi1

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_012041978.1 BBTA_RS08080 branched-chain amino acid aminotransferase

Query= reanno::Cup4G11:RR42_RS25890
         (363 letters)



>NCBI__GCF_000015165.1:WP_012041978.1
          Length = 359

 Score =  439 bits (1130), Expect = e-128
 Identities = 217/356 (60%), Positives = 263/356 (73%), Gaps = 1/356 (0%)

Query: 6   TFSLEPNPNALDAATRDALMRDPAFGRVFTDHMVTITWREGQGWQDAKVTARKPFSIDPA 65
           TF ++P  N      R A + +P FGRVFTDHM  + + + +GW  A+V +R  F +DPA
Sbjct: 4   TFDIKPTTNPTSDQERAAKLANPGFGRVFTDHMAVVQFSQDKGWHSARVESRANFPLDPA 63

Query: 66  CSVLHYGQEIFEGMKAYRGADGAVTLFRPLENARRFQASAKRMAMPALPESLFLEAIEQL 125
            +VLHY QEIFEG+KAY+  DG V LFRP  NA+RF  SA+RMAM  LP+++F+EA+EQL
Sbjct: 64  AAVLHYAQEIFEGLKAYKRDDGGVNLFRPDANAQRFWNSAERMAMAQLPQNVFIEAVEQL 123

Query: 126 VRIDQAWVPHGSGSLYLRPFMFANEVFLGIKPASEFIFCVIACPVGPYFKGGDKAVSVWV 185
           VRID+AW+P G GSLYLRPFM ANEVFLG+KP++E+IF VIA PVG YFKGG   VS+WV
Sbjct: 124 VRIDRAWIPGGEGSLYLRPFMIANEVFLGVKPSAEYIFAVIASPVGSYFKGGPAPVSIWV 183

Query: 186 SENYTRAAPGGTGEAKCGGNYAGSLVAQNEATANGCDQVVFLDAAEHRWVEELGGMNIFF 245
           SENYTRAA GGTG  KCGGNYA SL AQ EA A+GCDQVVFLDA E R+VEELGGMN+FF
Sbjct: 184 SENYTRAAVGGTGGVKCGGNYAASLKAQAEAIAHGCDQVVFLDAIERRYVEELGGMNVFF 243

Query: 246 VMDDGTLVTPPLSGSILPGITRASVIELAREMGMVVEERRYSYPEWEADAKSGRLAEAFV 305
           V DDG+L TPPL G+ILPGITR S+I+LAR+ G  V E  Y+  +W ADAKSG+L EAF 
Sbjct: 244 VFDDGSLSTPPL-GTILPGITRDSIIKLARDAGREVREEAYAIDQWRADAKSGKLKEAFA 302

Query: 306 CGTAATLVAIGEVRSARTRFAIGNGTAGNTVKVLRDRLVEIQRNQAAGPAGWVHHV 361
           CGTAA +  IG+VRSA     I  G AG     LR +LV+IQ  ++A P  W+  V
Sbjct: 303 CGTAAVISPIGKVRSASGDVLINGGEAGPVAMGLRKQLVDIQYGRSADPHNWIRDV 358


Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 447
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 359
Length adjustment: 29
Effective length of query: 334
Effective length of database: 330
Effective search space:   110220
Effective search space used:   110220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_012041978.1 BBTA_RS08080 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.28632.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28632.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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