Alignments for a candidate for serC in Bradyrhizobium sp. BTAi1

Align Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 (characterized)
to candidate WP_012042058.1 BBTA_RS08495 phosphoserine transaminase

Query= SwissProt::P52878
         (370 letters)



>NCBI__GCF_000015165.1:WP_012042058.1
          Length = 390

 Score =  474 bits (1221), Expect = e-138
 Identities = 229/375 (61%), Positives = 273/375 (72%), Gaps = 10/375 (2%)

Query: 2   KPTRVPNNPCFSSGPCAKHPGYSIEELKDTPFGRSHRSNLGKEKLAEAIKKTRDMLGLPD 61
           KP++ P  P FSSGPCAK PG++ E LKD P GRSHR+ +GK KL +AI+ TRD+L +P 
Sbjct: 5   KPSQRPAVPHFSSGPCAKRPGWTAENLKDAPLGRSHRAKIGKAKLKQAIELTRDVLEVPA 64

Query: 62  DYLVGIVPASDTGAFEMCLWSMLGCRGVDVLVWESFSKGWATDITKQLKLKDVRVFEAEY 121
           DY +GIVPASDTGA EM LWS+LG R V  + WESF +GW +DI K+LKLKDV    A Y
Sbjct: 65  DYKIGIVPASDTGAVEMALWSLLGARPVTTIAWESFGEGWVSDIVKELKLKDVTKLHAGY 124

Query: 122 GKLPDLKKVDFKNDVVFVWNGTTSGVKVPNGDWIPENREGLTLCDATSAIFAMDIPYHKL 181
           G++PDL K D   D+VF WNGTTSGV+VPN DWI  +REGLT+CDATSA FA  + + KL
Sbjct: 125 GEIPDLSKADPATDIVFTWNGTTSGVRVPNADWISASREGLTICDATSAAFAQALDWPKL 184

Query: 182 DVITFSWQKVLGGEGAHGMLILSPRAVQRLESYTPAWPLPKIFRLTKGGKLNKKIFEGST 241
           DV+TFSWQK LGGE AHGMLILSPRAV+RLE+Y PAWPLPKIFRLTKGGKLN  IFEG T
Sbjct: 185 DVVTFSWQKALGGEAAHGMLILSPRAVERLETYKPAWPLPKIFRLTKGGKLNAGIFEGET 244

Query: 242 INTPSMLANEDWLATLKWAESVGGLKPLIQRTNDNLAVFEAFVAKNNWIHFLAETKEIRS 301
           INTPSML  ED+L  L W +S+GGLK LI R + N  V   + A+  WI FLA+   IRS
Sbjct: 245 INTPSMLCVEDYLDALNWGKSIGGLKALIARADANTKVLADWKARTPWIDFLAQDPAIRS 304

Query: 302 STSVCFKV----------DLSDEKLKELIKTLEKEKVAYDIGSYRDAPSGLRIWCGATVE 351
           +TSVC KV          D   E  K+L+  +EKE   +D   YRDAP+GLRIWCGATVE
Sbjct: 305 NTSVCLKVVDPAITALSADAQAEFAKKLVSLVEKENAGFDFAHYRDAPAGLRIWCGATVE 364

Query: 352 KEDLQCLCEWIEWAY 366
             D+  L +WI+WA+
Sbjct: 365 ASDVALLTQWIDWAF 379


Lambda     K      H
   0.318    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 496
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 390
Length adjustment: 30
Effective length of query: 340
Effective length of database: 360
Effective search space:   122400
Effective search space used:   122400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012042058.1 BBTA_RS08495 (phosphoserine transaminase)
to HMM TIGR01365 (phosphoserine aminotransferase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.26391.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26391.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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