Alignments for a candidate for serB in Bradyrhizobium sp. BTAi1

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_012045967.1 BBTA_RS28480 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_000015165.1:WP_012045967.1
          Length = 296

 Score =  160 bits (404), Expect = 3e-44
 Identities = 97/208 (46%), Positives = 124/208 (59%), Gaps = 5/208 (2%)

Query: 25  KLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVALLKGVS 84
           KL   DMDST+I  EC+DE+A+ AG KA V+AITE AMRGEI+ ++ +LR+RVALLK + 
Sbjct: 82  KLFLADMDSTMIGQECIDELAEFAGLKARVSAITERAMRGEIA-FEPALRERVALLKDLP 140

Query: 85  VASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYTRSNVL 144
           V+ +DEV   R++L PG  +LV   +  G    L+SGGFT FT  I   +G    R+N L
Sbjct: 141 VSVVDEVLAKRIKLTPGGRQLVMTMRAHGAYTCLISGGFTLFTRPIAATIGFQENRANEL 200

Query: 145 ETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPMMGEAG 204
              DG LTG  V +P   I   + K   L E      +     +A+GDGANDL M+  AG
Sbjct: 201 VVADGKLTGD-VREP---IIGRDAKLATLTELRESFDLDEIDTLAVGDGANDLGMIEAAG 256

Query: 205 LSVAYHAKPRVREQAMVAINEGGLDRLL 232
           L VAYHAKP V   A   I+ G L  LL
Sbjct: 257 LGVAYHAKPAVSAAASARIDHGDLTALL 284


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 206
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 296
Length adjustment: 25
Effective length of query: 211
Effective length of database: 271
Effective search space:    57181
Effective search space used:    57181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_012045967.1 BBTA_RS28480 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.6781.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6781.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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