Alignments for a candidate for ilvE in Sinorhizobium medicae WSM419

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_012067624.1 SMED_RS17195 branched-chain amino acid aminotransferase

Query= reanno::Cup4G11:RR42_RS25890
         (363 letters)



>NCBI__GCF_000017145.1:WP_012067624.1
          Length = 365

 Score =  435 bits (1118), Expect = e-126
 Identities = 213/356 (59%), Positives = 262/356 (73%), Gaps = 1/356 (0%)

Query: 4   QTTFSLEPNPNALDAATRDALMRDPAFGRVFTDHMVTITWREGQGWQDAKVTARKPFSID 63
           + TF  E N N L  + R+AL+ +P FGRVFTDHMVTI + E +GW DAKV  RK F +D
Sbjct: 6   EQTFLFEQNANPLATSEREALLANPGFGRVFTDHMVTIRYCESRGWHDAKVGPRKAFDLD 65

Query: 64  PACSVLHYGQEIFEGMKAYRGADGAVTLFRPLENARRFQASAKRMAMPALPESLFLEAIE 123
           P+  VLHY QEIFEGMKAY    G  TLFRP  NARRF+ SA R+AM  LPE LF+ ++ 
Sbjct: 66  PSTLVLHYAQEIFEGMKAYGLPGGGATLFRPDANARRFRNSALRLAMAPLPEELFIRSVR 125

Query: 124 QLVRIDQAWVPHGSGS-LYLRPFMFANEVFLGIKPASEFIFCVIACPVGPYFKGGDKAVS 182
           +LVR+D+ W+P   G+ LYLRPFM A EV LG+KP++E+++CVIA  VG YFKGG  AV+
Sbjct: 126 ELVRVDRDWIPAAEGAALYLRPFMIATEVLLGVKPSAEYLYCVIASSVGSYFKGGAPAVT 185

Query: 183 VWVSENYTRAAPGGTGEAKCGGNYAGSLVAQNEATANGCDQVVFLDAAEHRWVEELGGMN 242
           +WVSEN+TRAAPGGTGEAKCGGNYA SL AQ EA   GC+QVVFLDA E R+VEELGGMN
Sbjct: 186 IWVSENFTRAAPGGTGEAKCGGNYAASLAAQAEAMQEGCEQVVFLDAVERRFVEELGGMN 245

Query: 243 IFFVMDDGTLVTPPLSGSILPGITRASVIELAREMGMVVEERRYSYPEWEADAKSGRLAE 302
           +FFV  DG+L TPPL+G+ILPGITR S+I LAR+MGM V E  Y+  +W+ADA+SGRL E
Sbjct: 246 VFFVFRDGSLQTPPLTGTILPGITRDSLITLARDMGMTVREEPYAIDQWQADAESGRLTE 305

Query: 303 AFVCGTAATLVAIGEVRSARTRFAIGNGTAGNTVKVLRDRLVEIQRNQAAGPAGWV 358
           AF CGTAA +  IG+V+     F IG+G AG     L+  L++IQ  +A    GW+
Sbjct: 306 AFACGTAAVVTPIGKVKGREHSFTIGDGGAGPVANRLKAALLDIQNGRAPDRHGWL 361


Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 440
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 365
Length adjustment: 29
Effective length of query: 334
Effective length of database: 336
Effective search space:   112224
Effective search space used:   112224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_012067624.1 SMED_RS17195 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.9659.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9659.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.