Alignments for a candidate for asp-kinase in Clostridium kluyveri DSM 555

Align aspartate kinase 1; EC 2.7.2.4 (characterized)
to candidate WP_012101829.1 CKL_RS07090 aspartate kinase

Query= CharProtDB::CH_090816
         (404 letters)



>NCBI__GCF_000016505.1:WP_012101829.1
          Length = 399

 Score =  335 bits (858), Expect = 2e-96
 Identities = 179/406 (44%), Positives = 265/406 (65%), Gaps = 14/406 (3%)

Query: 1   MKIIVQKFGGTSVKDDKGRKLALGHIKEAISEGYKVVVVVSAMGRKGDPYATDSLLGLLY 60
           MKI++QKFGGTSV   + R+  +  I +A  +G+  VVVVSAMGRKG PYATD+LL L+ 
Sbjct: 1   MKIVIQKFGGTSVSTHERREQVVNKILKAKDKGFCPVVVVSAMGRKGQPYATDTLLSLIK 60

Query: 61  GDQSAISPREQDLLLSCGETISSVVFTSMLLDNGVKAAALTGAQAGFLTNDQHTNAKIIE 120
            D    +P   DLL+SCGE IS+VV    LL  GVKA  LTG QAG +T+D + NA I++
Sbjct: 61  EDFKIKNPLGVDLLISCGEIISTVVLADELLSQGVKAVPLTGGQAGIITDDTYNNASILK 120

Query: 121 MKPERLFSVLANHDAVVVAGFQGATEKGDTTTIGRGGSDTSAAALGAAVDAEYIDIFTDV 180
           +K ERL +++      +VAGFQG +E G  TT+GRGGSD +A+ LG A+D+E I+I+TDV
Sbjct: 121 VKKERLLNLINEGKIPIVAGFQGESESGHITTLGRGGSDVTASILGVALDSESIEIYTDV 180

Query: 181 EGVMTADPRVVENAKPLPVVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYSND 240
           +G+MTADP +V  A  +  ++Y E+   A QGAKVI PRAV+IAM   VP+ V++T ++ 
Sbjct: 181 DGIMTADPGIVSEAFLIEQISYNEVFQFADQGAKVIHPRAVKIAMSGNVPLVVKNTLNDC 240

Query: 241 KGTLVTSHHSSKVGSDVFERLITGIAHVKDVTQFKVPAKIGQYNVQTEVF----KAMANA 296
           KGT++T   +S +G    +++I+GI  + +  Q  V      YN   +++    + MAN 
Sbjct: 241 KGTIIT---NSVIGES--DKVISGITSMDNRIQVTV-----NYNENNKIYNTLLEEMANN 290

Query: 297 GISVDFFNITPSEIVYTVAGNKTETAQRILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVT 356
            IS+D  N+ PS+ ++T+        + +  ++     +  NC+K++ +G+G+ G+PGV 
Sbjct: 291 SISIDLINVFPSKQIFTIDNKDIGNFKIVAGNLALVYSLIENCSKIALIGSGMRGIPGVM 350

Query: 357 SKIVSALSEKEIPILQSADSHTTIWVLVHEADMVPAVNALHEEFEL 402
           ++I+  L E+ I +LQ+ADSHTTIW LV  ++   A+NALH+EF L
Sbjct: 351 ARILKVLYEEGIEVLQTADSHTTIWCLVKSSETKRAINALHKEFLL 396


Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 427
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 399
Length adjustment: 31
Effective length of query: 373
Effective length of database: 368
Effective search space:   137264
Effective search space used:   137264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_012101829.1 CKL_RS07090 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.14530.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14530.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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