Alignments for a candidate for ilvE in Xanthobacter autotrophicus Py2

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_012114576.1 XAUT_RS12870 branched-chain amino acid aminotransferase

Query= BRENDA::O86428
         (307 letters)



>NCBI__GCF_000017645.1:WP_012114576.1
          Length = 297

 Score =  222 bits (565), Expect = 9e-63
 Identities = 122/294 (41%), Positives = 173/294 (58%), Gaps = 9/294 (3%)

Query: 6   RDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYDTPQGTAIFRLQAHTDRLFDS 65
           RDG IWYDG  V W DA  HVL+H LHYG  VFEG RAY    G  IF+   H++RL  S
Sbjct: 11  RDGWIWYDGVFVPWADAKLHVLSHGLHYGSTVFEGERAY----GGTIFKSAEHSERLRLS 66

Query: 66  AHIMNMQIPYSRDEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHVIIAAW 125
           A +++  IPY+  EI+ A +A + +NNL  AYIRP+ + GSE MG+ A    +H+ I  W
Sbjct: 67  AEMLDFTIPYTIGEIDAAKKATLEKNNLVDAYIRPVAWRGSEMMGVAAQKNTIHLAIGVW 126

Query: 126 SWGAYMGEEALQQGIKVRTSSFTRHHVNISMTRAKSNGAYINSMLALQEAISGGADEAMM 185
            W +Y   E  Q+G+++  S + R        +AK+ G Y+   ++   A   G  +A+M
Sbjct: 127 EWPSYFDPEQRQKGLRLDLSEWRRPDPATIPCKAKAAGLYMICTISKHRAERRGFADALM 186

Query: 186 LDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRNTILTLAAEHGFKLVEKRITRDE 245
           LD  GYVAE +G N+F +KDGVI+TP     L+G+TR T++ +A  HG ++VE+ I  +E
Sbjct: 187 LDYRGYVAECTGANVFFVKDGVIHTPTPDCFLDGLTRRTVIDIARRHGMEVVERHIKPEE 246

Query: 246 VYIADEAFFTGTAAEVTPIREV-DGRKIGAGRRGPVTEKLQKAYFDLVSGKTEA 298
           +    E F TGTAAEVTP+  + D     +G    +T +L  +Y   V  K +A
Sbjct: 247 LSSFTECFITGTAAEVTPVGSIADWHFAPSG----ITHQLMDSYTAEVRPKQQA 296


Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 281
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 297
Length adjustment: 27
Effective length of query: 280
Effective length of database: 270
Effective search space:    75600
Effective search space used:    75600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012114576.1 XAUT_RS12870 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.13985.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13985.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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