Align Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 (characterized)
to candidate WP_012169676.1 AZC_RS05880 carbamoyl-phosphate synthase large subunit
Query= SwissProt::P25994
(1071 letters)
>NCBI__GCF_000010525.1:WP_012169676.1
Length = 1107
Score = 954 bits (2466), Expect = 0.0
Identities = 514/1088 (47%), Positives = 718/1088 (65%), Gaps = 49/1088 (4%)
Query: 1 MPKRVDINKILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVILVNSNPATIMTDTEM 60
MPKR D+ IL++G+GPI+IGQA EFDY+GTQAC AL+EEGY V+LVNSNPATIMTD +M
Sbjct: 1 MPKRTDLETILIVGAGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPDM 60
Query: 61 ADRVYIEPLTPEFLTRIIRKERPD-----AILPTLGGQTGLNLAVELSERGVLAECGVEV 115
AD YIEP+TPE + +II KER D A+LPT+GGQT LN A+ L + G L + VE+
Sbjct: 61 ADVTYIEPITPEIVAKIIEKERGDRSKGFALLPTMGGQTALNCALSLKKMGTLEKFDVEM 120
Query: 116 LGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEAEKFVSQIGFPVIVRPAYTLG 175
+G AI +AEDR+LFR M ++ P S I +L EA + + ++G P I+RP++T+G
Sbjct: 121 IGATAEAIDKAEDRELFRDAMTKIGLDTPRSRQIKTLGEALEALDEVGLPAIIRPSFTMG 180
Query: 176 GTGGGICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKEIEYEVMRDSQDHAIVVCNME 235
GTGGGI N+ E EI+E G+ SP ++ L+E+S+ G+KE E EV+RD D+ I+VC++E
Sbjct: 181 GTGGGIAYNKAEFIEIIERGIDASPTNEVLVEESVLGWKEYEMEVVRDKADNCIIVCSIE 240
Query: 236 NIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLIRALGIE-GGCNVQLALDPDSFQY 294
N+DP+G+HTGDSI VAP+ TL+D+EYQ++R+ SL ++R +G+E GG NVQ A+DP S +
Sbjct: 241 NLDPMGVHTGDSITVAPALTLTDKEYQIMRDASLAVLREIGVETGGSNVQFAIDPASGRM 300
Query: 295 YIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLSLDEMMNPVT-GKTYAAFEPALDYV 353
+IE+NPRVSRSSALASKATG+PIAK+AA++AVG +LDE+ N +T G T A+FEP +DYV
Sbjct: 301 IVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLDEIANDITGGATPASFEPTIDYV 360
Query: 354 VSKIPRWPFDKFESANRKLGTQMKATGEVMAIGRTLEESLLKAVRSLEADVYHLELKDAA 413
V+KIPR+ F+KF A+ L T MK+ GE MAIGRT +ESL KA+RSLE + L+ D
Sbjct: 361 VTKIPRFAFEKFPGADNTLTTSMKSVGEAMAIGRTFQESLQKALRSLETGLTGLDEIDIE 420
Query: 414 DISD----ELLEKRIKKAGDERLFYLAEAYRRGYTVEDLHEFSAIDVFFLHKLFGIVQFE 469
+ + I +RL +A+A R G T +H ID +FL ++ IV E
Sbjct: 421 GLGQGDDGSAIRAAIGVPTPDRLLKVAQAMRFGLTDAQIHAACKIDPWFLEQIRAIVDTE 480
Query: 470 KELKANAGDT--DVLRRAKELGFSDQYISREWKMKESELYSLRKQAGIAPVFKMVDTCAA 527
+++ T LR K GFSD ++ + E+E+ R + P +K +DTCAA
Sbjct: 481 AKVRKFGLPTTPGALRALKAQGFSDARLATLAGIGEAEVRERRHALDVRPAYKRIDTCAA 540
Query: 528 EFESETPYFYSTYEE------ENESVVTDKKSVMVLGSGPIRIGQGVEFDYATVHSVWAI 581
EF S T Y YSTYE +E+ ++++ V++LG GP RIGQG+EFDY H+ +A+
Sbjct: 541 EFASPTAYMYSTYEAPFAGKLADEAQPSEREKVVILGGGPNRIGQGIEFDYCCCHAAFAL 600
Query: 582 KQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQP----MGVVVQFGGQ 637
K AGYEAI+VN NPETVSTD+ SD+LYFEPLT EDV+ +ID E+ GV+VQFGGQ
Sbjct: 601 KDAGYEAIMVNCNPETVSTDYDTSDRLYFEPLTSEDVLELIDRERTKGTLKGVIVQFGGQ 660
Query: 638 TAINLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIA 697
T + LA L V ILGTS + +D AEDRD+F+ L +L + QP A SV Q ++A
Sbjct: 661 TPLKLARALEEADVPILGTSPDAIDLAEDRDRFKHLLDKLKLRQPANGIAYSVEQGRTVA 720
Query: 698 SDIGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAV------------------KINP- 738
S++GYP++VRPSYVLGGRAM+I+ + +L Y+ + + +IN
Sbjct: 721 SELGYPLVVRPSYVLGGRAMQIIRDDSQLGDYLLDTLPGLVPQDVKSRYPNDKTGQINTV 780
Query: 739 --QHPVLIDRYLTGK-EIEVDAVSDGETVVIPGIMEHIERAGVHSGDSIAVYPPQSLTED 795
++P+L DRYL+ E++VDA+ DG+ V I GIMEHIE AG+HSGDS PP SL ED
Sbjct: 781 LGKNPLLFDRYLSDAIEVDVDALCDGKDVFIAGIMEHIEEAGIHSGDSACSLPPHSLDED 840
Query: 796 IKKKIEQYTIALAKGLNIVGLLNIQFVLSQGEVYVLEVNPRSSRTVPFLSKITGIPMANL 855
+E+ T A+A L + GL+N+Q+ + G +YVLEVNPR+SRTVPF++K+ G P+A +
Sbjct: 841 TIAALEKQTAAMALALGVGGLMNVQYAIKDGVIYVLEVNPRASRTVPFVAKVIGSPIAKI 900
Query: 856 ATKIILGQKLAAFGYTEGLQPEQQGVFVKAPVFSFAKLRRVDITLGPEMKSTGEVMGKDS 915
A +++ G+K+A+FG + + + VK VF FA+ VD LGPEM+STGEVMG D+
Sbjct: 901 AARVMAGEKIASFGLKKS---TLKHIAVKEAVFPFARFPGVDTVLGPEMRSTGEVMGLDT 957
Query: 916 TLEKALYKALIASGIQIPNYGSVLLTVADKDKEEGLAIAKRFHAIGYNILATEGTAGYLK 975
A K+ + G ++P G+V ++V D DK L K +G+ ++AT GT +L
Sbjct: 958 DYGVAFAKSQLGGGTKVPKSGTVFVSVKDSDKPRILPTIKMLVDLGFKVIATSGTQRFLA 1017
Query: 976 EASIPAKVVGKIGQDGPNLLDVIRNGEAQFVINTLTKGKQPARDGFRIRRESVENGVACL 1035
E + A + K+ + P+++D I+NG Q V NT T+G+Q D +RR ++ + V
Sbjct: 1018 ENGVEAGKINKVLEGRPHIVDDIKNGGVQLVFNT-TEGQQALSDSRSLRRAALLHKVPYY 1076
Query: 1036 TSLDTAEA 1043
T+L A A
Sbjct: 1077 TTLSGAIA 1084
Lambda K H
0.316 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2855
Number of extensions: 133
Number of successful extensions: 22
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1071
Length of database: 1107
Length adjustment: 46
Effective length of query: 1025
Effective length of database: 1061
Effective search space: 1087525
Effective search space used: 1087525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Align candidate WP_012169676.1 AZC_RS05880 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.10174.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10174.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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