Alignments for a candidate for asd in Azorhizobium caulinodans ORS 571

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_012172254.1 AZC_RS19225 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000010525.1:WP_012172254.1
          Length = 344

 Score =  313 bits (803), Expect = 3e-90
 Identities = 166/331 (50%), Positives = 221/331 (66%), Gaps = 3/331 (0%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           + VA+ GATG VG  +L +L ER FP DE+  LAS RS G    +  KT++V+++  +D+
Sbjct: 3   YKVAVVGATGNVGREILSILAERGFPADEVVALASRRSMGVEVSYGDKTLKVKDLATYDF 62

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           S   I L SAGG +S +W+P     G VVIDN+S +R D D+PL+VPEVN +AI  F  +
Sbjct: 63  SDTDICLMSAGGAVSKEWSPKIGAQGCVVIDNSSQWRTDPDVPLIVPEVNADAIVGFTKK 122

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184
           NIIANPNCST Q++VALKP++DA  I+R+ V+TYQSVSGAGK  +DEL  QT  +    P
Sbjct: 123 NIIANPNCSTAQLVVALKPLHDAATIKRVVVSTYQSVSGAGKDAMDELFSQTRAVFVSDP 182

Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244
            E   F ++IAFN IPQID FM++G+TKEE KMV ET+KI  DP I +  TCVRVPVF  
Sbjct: 183 VEAKKFPKRIAFNLIPQIDVFMEDGFTKEEWKMVVETKKIL-DPKIKLTATCVRVPVFIS 241

Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDGIELF--RGADFPTQVRDAGGKDHVLVGRVRNDI 302
           H+E+V+VE    + AE    +L +  GI +   R         +A G+D   + R+R+D 
Sbjct: 242 HSESVNVEFEKELSAEDARKILREAPGILVVDTREPGGYATPHEAAGEDATYISRLRDDP 301

Query: 303 SHHSGINLWVVADNVRKGAATNAVQIAELLV 333
           +  +GI  W V+DN+RKGAA NAVQIAE+LV
Sbjct: 302 TVENGIAFWCVSDNLRKGAALNAVQIAEVLV 332


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 325
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 344
Length adjustment: 28
Effective length of query: 309
Effective length of database: 316
Effective search space:    97644
Effective search space used:    97644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012172254.1 AZC_RS19225 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.14936.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14936.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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